Probabilistic model based on circular statistics for quantifying coverage depth dynamics originating from DNA replication

Por Suzuki, Shinya, Yamada, Takuji
Publicado no PeerJ (2020)

Extraction of phylogenetic network modules from the metabolic network

Por Yamada, Takuji, Kanehisa, Minoru, Goto, Susumu
Publicado em 2006

A hospital-acquired outbreak of catheter-related nontuberculous mycobacterial infection in children on peritoneal dialysis

Por Yamada, Takuji, Ushijima, Katsumi, Uemura, Osamu
Publicado no CEN Case Rep (2014)

FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization

Por Darzi, Youssef, Yamate, Yuta, Yamada, Takuji
Publicado no Bioinformatics (2019)

Significance of the gut microbiome in multistep colorectal carcinogenesis

Por Mizutani, Sayaka, Yamada, Takuji, Yachida, Shinichi
Publicado no Cancer Sci (2020)

iPath3.0: interactive pathways explorer v3

Por Darzi, Youssef, Letunic, Ivica, Bork, Peer, Yamada, Takuji
Publicado no Nucleic Acids Res (2018)

Evolution of Aspergillus oryzae before and after domestication inferred by large-scale comparative genomic analysis

Por Watarai, Naoki, Yamamoto, Nozomi, Sawada, Kazunori, Yamada, Takuji
Publicado no DNA Res (2019)

iPath2.0: interactive pathway explorer

Por Yamada, Takuji, Letunic, Ivica, Okuda, Shujiro, Kanehisa, Minoru, Bork, Peer
Publicado em 2011

CLAST: CUDA implemented large-scale alignment search tool

Por Yano, Masahiro, Mori, Hiroshi, Akiyama, Yutaka, Yamada, Takuji, Kurokawa, Ken
Publicado no BMC Bioinformatics (2014)

FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data

Por Uchiyama, Takeru, Irie, Mitsuru, Mori, Hiroshi, Kurokawa, Ken, Yamada, Takuji
Publicado no PLoS One (2015)

VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

Por Mori, Hiroshi, Maruyama, Takayuki, Yano, Masahiro, Yamada, Takuji, Kurokawa, Ken
Publicado no BMC Syst Biol (2018)

Targeted enzyme gene re-positioning: A computational approach for discovering alternative bacterial enzymes for the synthesis of plant-specific secondary metabolites

Por Nakamura, Yuya, Hirose, Shuichi, Taniguchi, Yuko, Moriya, Yuki, Yamada, Takuji
Publicado no Metab Eng Commun (2019)

Clustering under the line graph transformation: application to reaction network

Por Nacher, Jose C, Ueda, Nobuhisa, Yamada, Takuji, Kanehisa, Minoru, Akutsu, Tatsuya
Publicado em 2004

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

Por Raes, Jeroen, Letunic, Ivica, Yamada, Takuji, Jensen, Lars Juhl, Bork, Peer
Publicado em 2011

Gluconobacter dominates the gut microbiome of the Asian palm civet Paradoxurus hermaphroditus that produces kopi luwak

Por Watanabe, Hikaru, Ng, Chong Han, Limviphuvadh, Vachiranee, Suzuki, Shinya, Yamada, Takuji
Publicado no PeerJ (2020)

VisANT: data-integrating visual framework for biological networks and modules

Por Hu, Zhenjun, Mellor, Joe, Wu, Jie, Yamada, Takuji, Holloway, Dustin, DeLisi, Charles
Publicado em 2005

DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe

Por Wang, Tianmin, Mori, Hiroshi, Zhang, Chong, Kurokawa, Ken, Xing, Xin-Hui, Yamada, Takuji
Publicado no BMC Bioinformatics (2015)

Constant maintenance of an alternative route of coronary flow in radical surgery for gastric cancer following coronary artery bypass grafting involving the right gastroepiploic art...

Por Ikari, Naoki, Seshimo, Akiyoshi, Taniguchi, Kiyoaki, Kotake, Sho, Yamada, Takuji, Narumiya, Kosuke, Yamamoto, Masakazu
Publicado no J Surg Case Rep (2017)

Minor taxa in human skin microbiome contribute to the personal identification

Por Watanabe, Hikaru, Nakamura, Issei, Mizutani, Sayaka, Kurokawa, Yumiko, Mori, Hiroshi, Kurokawa, Ken, Yamada, Takuji
Publicado no PLoS One (2018)

Successful conversion surgery for unresectable gastric cancer with giant para-aortic lymph node metastasis after downsizing chemotherapy with S-1 and oxaliplatin: a case report

Por Serizawa, Akiko, Taniguchi, Kiyoaki, Yamada, Takuji, Amano, Kunihiko, Kotake, Sho, Ito, Shunichi, Yamamoto, Masakazu
Publicado no Surg Case Rep (2018)