A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing

por Petti, Allegra A., Williams, Stephen R., Miller, Christopher A., Fiddes, Ian T., Srivatsan, Sridhar N., Chen, David Y., Fronick, Catrina C., Fulton, Robert S., Church, Deanna M., Ley, Timothy J.
Publicado en Nat Commun (2019)

Rapid and extraction-free detection of SARS-CoV-2 from saliva with colorimetric LAMP

por Lalli, Matthew A, Langmade, S Joshua, Chen, Xuhua, Fronick, Catrina C, Sawyer, Christopher S, Burcea, Lauren C, Wilkinson, Michael N, Fulton, Robert S, Heinz, Michael, Buchser, William J, Head, Richard D, Mitra, Robi D, Milbrandt, Jeffrey
Publicado en medRxiv (2020)

Rapid and Extraction-Free Detection of SARS-CoV-2 from Saliva by Colorimetric Reverse-Transcription Loop-Mediated Isothermal Amplification

por Lalli, Matthew A, Langmade, Joshua S, Chen, Xuhua, Fronick, Catrina C, Sawyer, Christopher S, Burcea, Lauren C, Wilkinson, Michael N, Fulton, Robert S, Heinz, Michael, Buchser, William J, Head, Richard D, Mitra, Robi D, Milbrandt, Jeffrey
Publicado en Clin Chem (2020)

Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

por Stong, Nicholas, Deng, Zhong, Gupta, Ravi, Hu, Sufen, Paul, Shiela, Weiner, Amber K., Eichler, Evan E., Graves, Tina, Fronick, Catrina C., Courtney, Laura, Wilson, Richard K., Lieberman, Paul M., Davuluri, Ramana V., Riethman, Harold
Publicado 2014

Recurrent somatic mutations affecting B-cell receptor signaling pathway genes in follicular lymphoma

por Krysiak, Kilannin, Gomez, Felicia, White, Brian S., Matlock, Matthew, Miller, Christopher A., Trani, Lee, Fronick, Catrina C., Fulton, Robert S., Kreisel, Friederike, Cashen, Amanda F., Carson, Kenneth R., Berrien-Elliott, Melissa M., Bartlett, Nancy L., Griffith, Malachi, Griffith, Obi L., Fehniger, Todd A.
Publicado en Blood (2017)

Subclones dominate at MDS progression following allogeneic hematopoietic cell transplant

por Jacoby, Meagan A., Duncavage, Eric J., Chang, Gue Su, Miller, Christopher A., Shao, Jin, Elliott, Kevin, Robinson, Joshua, Fulton, Robert S., Fronick, Catrina C., O’Laughlin, Michelle, Heath, Sharon E., Pusic, Iskra, Welch, John S., Link, Daniel C., DiPersio, John F., Westervelt, Peter, Ley, Timothy J., Graubert, Timothy A., Walter, Matthew J.
Publicado en JCI Insight (2018)

CpG island hypermethylation mediated by DNMT3A is a consequence of AML progression

por Spencer, David H., Russler-Germain, David A., Ketkar-Kulkarni, Shamika, Helton, Nichole M., Lamprecht, Tamara L., Fulton, Robert S., Fronick, Catrina C., O’Laughlin, Michelle, Heath, Sharon E., Shinawi, Marwan, Westervelt, Peter, Payton, Jacqueline E., Wartman, Lukas D., Welch, John S., Wilson, Richard K., Walter, Matthew J., Link, Daniel C., DiPersio, John F., Ley, Timothy J.
Publicado en Cell (2017)

An ‘off-the-shelf’ fratricide-resistant CAR-T for the treatment of T cell hematologic malignancies

por Cooper, Matthew L., Choi, Jaebok, Staser, Karl, Ritchey, Julie K., Devenport, Jessica M., Eckardt, Kayla, Rettig, Michael P., Wang, Bing, Eissenberg, Linda G., Ghobadi, Armin, Gehrs, Leah N., Prior, Julie L., Achilefu, Samuel, Miller, Christopher A., Fronick, Catrina C., O’Neal, Julie, Gao, Feng, Weinstock, David M., Gutierrez, Alejandro, Fulton, Robert S., DiPersio, John F
Publicado en Leukemia (2018)

Mutational landscape and response are conserved in peripheral blood of AML and MDS patients during decitabine therapy

por Duncavage, Eric J., Uy, Geoffrey L., Petti, Allegra A., Miller, Christopher A., Lee, Yi-Shan, Tandon, Bevan, Gao, Feng, Fronick, Catrina C., O’Laughlin, Michelle, Fulton, Robert S., Wilson, Richard K., Jacoby, Meagan A., Cashen, Amanda F., Wartman, Lukas D., Walter, Matthew J., Westervelt, Peter, Link, Daniel C., DiPersio, John F., Ley, Timothy J., Welch, John S.
Publicado en Blood (2017)

Dynamic Changes in the Clonal Structure of MDS and AML in Response to Epigenetic Therapy

por Uy, Geoffrey L., Duncavage, Eric J., Chang, Gue Su, Jacoby, Meagan A., Miller, Christopher A., Shao, Jin, Heath, Sharon, Elliott, Kevin, Reinick, Teresa, Fulton, Robert S., Fronick, Catrina C., O’Laughlin, Michelle, Ganel, Liron, Abboud, Camille N., Cashen, Amanda F., DiPersio, John F., Wilson, Richard K, Link, Daniel C., Welch, John S., Ley, Timothy J., Graubert, Timothy A., Westervelt, Peter, Walter, Matthew J.
Publicado en Leukemia (2016)

Comprehensive discovery of non-coding RNAs in acute myeloid leukemia cell transcriptomes

por Zhang, Jin, Griffith, Malachi, Miller, Christopher A., Griffith, Obi L., Spencer, David H., Walker, Jason R., Magrini, Vincent, McGrath, Sean D., Ly, Amy, Helton, Nichole M., Trissal, Maria, Link, Daniel C., Dang, Ha X., Larson, David E., Kulkarni, Shashikant, Cordes, Matthew G., Fronick, Catrina C., Fulton, Robert S., Klco, Jeffery M., Mardis, Elaine R., Ley, Timothy J., Wilson, Richard K., Maher, Christopher A.
Publicado en Exp Hematol (2017)

Immune Escape of Relapsed AML Cells after Allogeneic Transplantation

por Christopher, Matthew J., Petti, Allegra A., Rettig, Michael P., Miller, Christopher A., Chendamarai, Ezhilarasi, Duncavage, Eric J., Klco, Jeffery M., Helton, Nicole M., O’Laughlin, Michelle, Fronick, Catrina C., Fulton, Robert S., Wilson, Richard K., Wartman, Lukas D., Welch, John S., Heath, Sharon E., Baty, Jack D., Payton, Jacqueline E., Graubert, Timothy A., Link, Daniel C., Walter, Matthew J., Westervelt, Peter, Ley, Timothy J., DiPersio, John F.
Publicado en N Engl J Med (2018)

Mutation Clearance after Transplantation for Myelodysplastic Syndrome

por Duncavage, Eric J., Jacoby, Meagan A., Chang, Gue Su, Miller, Christopher A., Edwin, Natasha, Shao, Jin, Elliott, Kevin, Robinson, Joshua, Abel, Haley, Fulton, Robert S., Fronick, Catrina C., O’Laughlin, Michelle, Heath, Sharon E., Brendel, Kimberly, Saba, Raya, Wartman, Lukas D., Christopher, Matthew J., Pusic, Iskra, Welch, John S., Uy, Geoffrey L., Link, Daniel C., DiPersio, John F., Westervelt, Peter, Ley, Timothy J., Trinkaus, Kathryn, Graubert, Timothy A., Walter, Matthew J.
Publicado en N Engl J Med (2018)

The clonal evolution of metastatic colorectal cancer

por Dang, Ha X., Krasnick, Bradley A., White, Brian S., Grossman, Julie G., Strand, Matthew S., Zhang, Jin, Cabanski, Christopher R., Miller, Christopher A., Fulton, Robert S., Goedegebuure, S. Peter, Fronick, Catrina C., Griffith, Malachi, Larson, David E., Goetz, Brian D., Walker, Jason R., Hawkins, William G., Strasberg, Steven M., Linehan, David C., Lim, Kian H., Lockhart, A. Craig, Mardis, Elaine R., Wilson, Richard K., Ley, Timothy J., Maher, Christopher A., Fields, Ryan C.
Publicado en Sci Adv (2020)

Optimizing cancer genome sequencing and analysis

por Griffith, Malachi, Miller, Christopher A., Griffith, Obi L., Krysiak, Kilannin, Skidmore, Zachary L., Ramu, Avinash, Walker, Jason R., Dang, Ha X., Trani, Lee, Larson, David E., Demeter, Ryan T., Wendl, Michael C., McMichael, Joshua F., Austin, Rachel E., Magrini, Vincent, McGrath, Sean D., Ly, Amy, Kulkarni, Shashikant, Cordes, Matthew G., Fronick, Catrina C., Fulton, Robert S., Maher, Christopher A., Ding, Li, Klco, Jeffery M., Mardis, Elaine R., Ley, Timothy J., Wilson, Richard K.
Publicado en Cell Syst (2015)

Co-evolution of tumor and immune cells during progression of multiple myeloma

por Liu, Ruiyang, Gao, Qingsong, Foltz, Steven M., Fowles, Jared S., Yao, Lijun, Wang, Julia Tianjiao, Cao, Song, Sun, Hua, Wendl, Michael C., Sethuraman, Sunantha, Weerasinghe, Amila, Rettig, Michael P., Storrs, Erik P., Yoon, Christopher J., Wyczalkowski, Matthew A., McMichael, Joshua F., Kohnen, Daniel R., King, Justin, Goldsmith, Scott R., O’Neal, Julie, Fulton, Robert S., Fronick, Catrina C., Ley, Timothy J., Jayasinghe, Reyka G., Fiala, Mark A., Oh, Stephen T., DiPersio, John F., Vij, Ravi, Ding, Li
Publicado en Nat Commun (2021)

The identification of a novel TP53 cancer susceptibility mutation through whole genome sequencing of a patient with therapy-related AML

por Link, Daniel C., Schuettpelz, Laura G., Shen, Dong, Wang, Jinling, Walter, Matthew J., Kulkarni, Shashikant, Payton, Jacqueline E., Ivanovich, Jennifer, Goodfellow, Paul J., Le Beau, Michelle, Koboldt, Daniel C., Dooling, David J., Fulton, Robert S., Bender, R. Hugh F., Fulton, Lucinda L., Delehaunty, Kimberly D., Fronick, Catrina C., Appelbaum, Elizabeth L., Schmidt, Heather, Abbott, Rachel, O'Laughlin, Michelle, Chen, Ken, McLellan, Michael D., Varghese, Nobish, Nagarajan, Rakesh, Heath, Sharon, Graubert, Timothy A., Ding, Li, Ley, Timothy J., Zambetti, Gerard P., Wilson, Richard K., Mardis, Elaine R.
Publicado 2011

The Role of Rare Protein-Coding Variants in Anti–Tumor Necrosis Factor Treatment Response in Rheumatoid Arthritis

por Cui, Jing, Diogo, Dorothee, Stahl, Eli A., Canhao, Helena, Mariette, Xavier, Greenberg, Jeffrey D., Okada, Yukinori, Pappas, Dimitrios A., Fulton, Robert S., Tak, Paul P., Nurmohamed, Michael T., Lee, Annette, Larson, David E., Kurreeman, Fina, Deluca, Tracie L., O’Laughlin, Michelle, Fronick, Catrina C., Fulton, Lucinda L., Mardis, Elaine R., van der Horst-Bruinsma, Irene E., Wolbink, Gert-Jan, Gregersen, Peter K., Kremer, Joel M., Crusius, J. Bart A., de Vries, Niek, Huizinga, Tom W. J., Fonseca, João Eurico, Miceli-Richard, Corinne, Karlson, Elizabeth W., Coenen, Marieke J. H., Barton, Anne, Plenge, Robert M., Raychaudhuri, Soumya
Publicado en Arthritis Rheumatol (2017)

TP53 and Decitabine in Acute Myeloid Leukemia and Myelodysplastic Syndromes

por Welch, John S., Petti, Allegra A., Miller, Christopher A., Fronick, Catrina C., O'Laughlin, Michelle, Fulton, Robert S., Wilson, Richard K., Baty, Jack D., Duncavage, Eric J., Tandon, Bevan, Lee, Yi-Shan, Wartman, Lukas D., Uy, Geoffrey L., Ghobadi, Armin, Tomasson, Michael H., Pusic, Iskra, Romee, Rizwan, Fehniger, Todd A., Stockerl-Goldstein, Keith E., Vij, Ravi, Oh, Stephen T., Abboud, Camille N., Cashen, Amanda F., Schroeder, Mark A., Jacoby, Meagan A., Heath, Sharon E., Luber, Kierstin, Janke, Megan R., Hantel, Andrew, Khan, Niloufer, Sukhanova, Madina J., Knoebel, Randall W., Stock, Wendy, Graubert, Timothy A., Walter, Matthew J., Westervelt, Peter, Link, Daniel C., DiPersio, John F., Ley, Timothy J.
Publicado en N Engl J Med (2016)

TYK2 Protein-Coding Variants Protect against Rheumatoid Arthritis and Autoimmunity, with No Evidence of Major Pleiotropic Effects on Non-Autoimmune Complex Traits

por Diogo, Dorothée, Bastarache, Lisa, Liao, Katherine P., Graham, Robert R., Fulton, Robert S., Greenberg, Jeffrey D., Eyre, Steve, Bowes, John, Cui, Jing, Lee, Annette, Pappas, Dimitrios A., Kremer, Joel M., Barton, Anne, Coenen, Marieke J. H., Franke, Barbara, Kiemeney, Lambertus A., Mariette, Xavier, Richard-Miceli, Corrine, Canhão, Helena, Fonseca, João E., de Vries, Niek, Tak, Paul P., Crusius, J. Bart A., Nurmohamed, Michael T., Kurreeman, Fina, Mikuls, Ted R., Okada, Yukinori, Stahl, Eli A., Larson, David E., Deluca, Tracie L., O'Laughlin, Michelle, Fronick, Catrina C., Fulton, Lucinda L., Kosoy, Roman, Ransom, Michael, Bhangale, Tushar R., Ortmann, Ward, Cagan, Andrew, Gainer, Vivian, Karlson, Elizabeth W., Kohane, Isaac, Murphy, Shawn N., Martin, Javier, Zhernakova, Alexandra, Klareskog, Lars, Padyukov, Leonid, Worthington, Jane, Mardis, Elaine R., Seldin, Michael F., Gregersen, Peter K., Behrens, Timothy, Raychaudhuri, Soumya, Denny, Joshua C., Plenge, Robert M.
Publicado en PLoS One (2015)