A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae

per Petti, Allegra A., Church, George M.
Publicat 2005

Survival of starving yeast is correlated with oxidative stress response and nonrespiratory mitochondrial function

per Petti, Allegra A., Crutchfield, Christopher A., Rabinowitz, Joshua D., Botstein, David
Publicat 2011

Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway

per McIsaac, R. Scott, Petti, Allegra A., Bussemaker, Harmen J., Botstein, David
Publicat 2012

Combinatorial control of diverse metabolic and physiological functions by transcriptional regulators of the yeast sulfur assimilation pathway

per Petti, Allegra A., McIsaac, R. Scott, Ho-Shing, Olivia, Bussemaker, Harmen J., Botstein, David
Publicat 2012

pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens

per Hundal, Jasreet, Carreno, Beatriz M., Petti, Allegra A., Linette, Gerald P., Griffith, Obi L., Mardis, Elaine R., Griffith, Malachi
Publicat a Genome Med (2016)

Coordinated regulation of sulfur and phospholipid metabolism reflects the importance of methylation in the growth of yeast

per Hickman, Mark J., Petti, Allegra A., Ho-Shing, Olivia, Silverman, Sanford J., McIsaac, R. Scott, Lee, Traci A., Botstein, David
Publicat 2011

RNA splicing is a primary link between genetic variation and disease

per Li, Yang I., van de Geijn, Bryce, Raj, Anil, Knowles, David A., Petti, Allegra A., Golan, David, Gilad, Yoav, Pritchard, Jonathan K.
Publicat a Science (2016)

Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae

per McIsaac, R. Scott, Silverman, Sanford J., McClean, Megan N., Gibney, Patrick A., Macinskas, Joanna, Hickman, Mark J., Petti, Allegra A., Botstein, David
Publicat 2011

Focused Ultrasound-enabled Brain Tumor Liquid Biopsy

per Zhu, Lifei, Cheng, Galen, Ye, Dezhuang, Nazeri, Arash, Yue, Yimei, Liu, Weijun, Wang, Xiaowei, Dunn, Gavin P., Petti, Allegra A., Leuthardt, Eric C., Chen, Hong
Publicat a Sci Rep (2018)

Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate

per Silverman, Sanford J., Petti, Allegra A., Slavov, Nikolai, Parsons, Lance, Briehof, Ryan, Thiberge, Stephan Y., Zenklusen, Daniel, Gandhi, Saumil J., Larson, Daniel R., Singer, Robert H., Botstein, David
Publicat 2010

A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing

per Petti, Allegra A., Williams, Stephen R., Miller, Christopher A., Fiddes, Ian T., Srivatsan, Sridhar N., Chen, David Y., Fronick, Catrina C., Fulton, Robert S., Church, Deanna M., Ley, Timothy J.
Publicat a Nat Commun (2019)

A dendritic cell vaccine increases the breadth and diversity of melanoma neoantigen-specific T cells

per Carreno, Beatriz M., Magrini, Vincent, Becker-Hapak, Michelle, Kaabinejadian, Saghar, Hundal, Jasreet, Petti, Allegra A., Ly, Amy, Lie, Wen-Rong, Hildebrand, William H., Mardis, Elaine R., Linette, Gerald P.
Publicat a Science (2015)

Haploinsufficiency for DNA methyltransferase 3A predisposes hematopoietic cells to myeloid malignancies

per Cole, Christopher B., Russler-Germain, David A., Ketkar, Shamika, Verdoni, Angela M., Smith, Amanda M., Bangert, Celia V., Helton, Nichole M., Guo, Mindy, Klco, Jeffery M., O’Laughlin, Shelly, Fronick, Catrina, Fulton, Robert, Chang, Gue Su, Petti, Allegra A., Miller, Christopher A., Ley, Timothy J.
Publicat a J Clin Invest (2017)

Remethylation of Dnmt3a(−/−) hematopoietic cells is associated with partial correction of gene dysregulation and reduced myeloid skewing

per Ketkar, Shamika, Verdoni, Angela M., Smith, Amanda M., Bangert, Celia V., Leight, Elizabeth R., Chen, David Y., Brune, Meryl K., Helton, Nichole M., Hoock, Mieke, George, Daniel R., Fronick, Catrina, Fulton, Robert S., Ramakrishnan, Sai Mukund, Chang, Gue Su, Petti, Allegra A., Spencer, David H., Miller, Christopher A., Ley, Timothy J.
Publicat a Proc Natl Acad Sci U S A (2020)

Breast cancer neoantigens can induce CD8(+) T-cell responses and antitumor immunity

per Zhang, Xiuli, Kim, Samuel, Hundal, Jasreet, Herndon, John M., Li, Shunqiang, Petti, Allegra A., Soysal, Savas D., Li, Lijin, McLellan, Mike D., Hoog, Jeremy, Primeau, Tina, Myers, Nancy, Vickery, Tammi L., Sturmoski, Mark, Hagemann, Ian S., Miller, Chris A., Ellis, Matthew J., Mardis, Elaine R., Hansen, Ted, Fleming, Timothy P., Goedegebuure, S. Peter, Gillanders, William E.
Publicat a Cancer Immunol Res (2017)

Mutational landscape and response are conserved in peripheral blood of AML and MDS patients during decitabine therapy

per Duncavage, Eric J., Uy, Geoffrey L., Petti, Allegra A., Miller, Christopher A., Lee, Yi-Shan, Tandon, Bevan, Gao, Feng, Fronick, Catrina C., O’Laughlin, Michelle, Fulton, Robert S., Wilson, Richard K., Jacoby, Meagan A., Cashen, Amanda F., Wartman, Lukas D., Walter, Matthew J., Westervelt, Peter, Link, Daniel C., DiPersio, John F., Ley, Timothy J., Welch, John S.
Publicat a Blood (2017)

Immune Escape of Relapsed AML Cells after Allogeneic Transplantation

per Christopher, Matthew J., Petti, Allegra A., Rettig, Michael P., Miller, Christopher A., Chendamarai, Ezhilarasi, Duncavage, Eric J., Klco, Jeffery M., Helton, Nicole M., O’Laughlin, Michelle, Fronick, Catrina C., Fulton, Robert S., Wilson, Richard K., Wartman, Lukas D., Welch, John S., Heath, Sharon E., Baty, Jack D., Payton, Jacqueline E., Graubert, Timothy A., Link, Daniel C., Walter, Matthew J., Westervelt, Peter, Ley, Timothy J., DiPersio, John F.
Publicat a N Engl J Med (2018)

Phase 1 trial of N-803, an IL-15 receptor agonist, with rituximab in patients with indolent non-Hodgkin lymphoma

per Foltz, Jennifer A., Hess, Brian T., Bachanova, Veronika, Bartlett, Nancy L., Berrien-Elliott, Melissa M., McClain, Ethan, Becker-Hapak, Michelle, Foster, Mark, Schappe, Timothy, Kahl, Brad, Mehta-Shah, Neha, Cashen, Amanda F., Marin, Nancy D., McDaniels, Kristen, Moreno, Chaz, Mosior, Matthew, Gao, Feng, Griffith, Obi L., Griffith, Malachi, Wagner, Julia A., Epperla, Narendranath, Rock, Amy D., Lee, John, Petti, Allegra A., Soon-Shiong, Patrick, Fehniger, Todd A.
Publicat a Clin Cancer Res (2021)

TP53 and Decitabine in Acute Myeloid Leukemia and Myelodysplastic Syndromes

per Welch, John S., Petti, Allegra A., Miller, Christopher A., Fronick, Catrina C., O'Laughlin, Michelle, Fulton, Robert S., Wilson, Richard K., Baty, Jack D., Duncavage, Eric J., Tandon, Bevan, Lee, Yi-Shan, Wartman, Lukas D., Uy, Geoffrey L., Ghobadi, Armin, Tomasson, Michael H., Pusic, Iskra, Romee, Rizwan, Fehniger, Todd A., Stockerl-Goldstein, Keith E., Vij, Ravi, Oh, Stephen T., Abboud, Camille N., Cashen, Amanda F., Schroeder, Mark A., Jacoby, Meagan A., Heath, Sharon E., Luber, Kierstin, Janke, Megan R., Hantel, Andrew, Khan, Niloufer, Sukhanova, Madina J., Knoebel, Randall W., Stock, Wendy, Graubert, Timothy A., Walter, Matthew J., Westervelt, Peter, Link, Daniel C., DiPersio, John F., Ley, Timothy J.
Publicat a N Engl J Med (2016)