Modeling gene expression control using Omes Law

Por Bussemaker, Harmen J
Publicado em 2006

REDUCE: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data

Por Roven, Crispin, Bussemaker, Harmen J.
Publicado em 2003

Identifying the genetic determinants of transcription factor activity

Por Lee, Eunjee, Bussemaker, Harmen J
Publicado em 2010

Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences

Por Ward, Lucas D., Bussemaker, Harmen J.
Publicado em 2008

Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models

Por Jansen, Ronald, Bussemaker, Harmen J., Gerstein, Mark
Publicado em 2003

Building a dictionary for genomes: Identification of presumptive regulatory sites by statistical analysis

Por Bussemaker, Harmen J., Li, Hao, Siggia, Eric D.
Publicado em 2000

Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA binding

Por van Steensel, Bas, Delrow, Jeffrey, Bussemaker, Harmen J.
Publicado em 2003

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data

Por Gao, Feng, Foat, Barrett C, Bussemaker, Harmen J
Publicado em 2004

Dissecting complex transcriptional responses using pathway-level scores based on prior information

Por Bussemaker, Harmen J, Ward, Lucas D, Boorsma, Andre
Publicado em 2007

DAF-16 and PQM-1: Partners in longevity

Por Tepper, Ronald G., Murphy, Coleen T., Bussemaker, Harmen J.
Publicado em 2014

Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeast

Por Ward, Lucas D, Wang, Junbai, Bussemaker, Harmen J
Publicado em 2014

TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors

Por Foat, Barrett C., Tepper, Ronald G., Bussemaker, Harmen J.
Publicado em 2008

The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex

Por Lu, Xiang-Jun, Olson, Wilma K., Bussemaker, Harmen J.
Publicado em 2010

In search of the determinants of enhancer–promoter interaction specificity

Por van Arensbergen, Joris, van Steensel, Bas, Bussemaker, Harmen J.
Publicado no Trends Cell Biol (2014)

DSSR: an integrated software tool for dissecting the spatial structure of RNA

Por Lu, Xiang-Jun, Bussemaker, Harmen J., Olson, Wilma K.
Publicado no Nucleic Acids Res (2015)

Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE

Por Riley, Todd R, Lazarovici, Allan, Mann, Richard S, Bussemaker, Harmen J
Publicado no eLife (2015)

Profiling condition-specific, genome-wide regulation of mRNA stability in yeast

Por Foat, Barrett C., Houshmandi, S. Sean, Olivas, Wendy M., Bussemaker, Harmen J.
Publicado em 2005

HP1 controls genomic targeting of four novel heterochromatin proteins in Drosophila

Por Greil, Frauke, de Wit, Elzo, Bussemaker, Harmen J, van Steensel, Bas
Publicado em 2007

T-profiler: scoring the activity of predefined groups of genes using gene expression data

Por Boorsma, André, Foat, Barrett C., Vis, Daniel, Klis, Frans, Bussemaker, Harmen J.
Publicado em 2005

Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway

Por McIsaac, R. Scott, Petti, Allegra A., Bussemaker, Harmen J., Botstein, David
Publicado em 2012