Cell-free DNA comprises an in vivo nucleosome footprint that informs its tissues-of-origin

Por Snyder, Matthew W., Kircher, Martin, Hill, Andrew J., Daza, Riza M., Shendure, Jay
Publicado no Cell (2016)

Multiplex Single Cell Profiling of Chromatin Accessibility by Combinatorial Cellular Indexing

Por Cusanovich, Darren A., Daza, Riza, Adey, Andrew, Pliner, Hannah, Christiansen, Lena, Gunderson, Kevin L., Steemers, Frank J., Trapnell, Cole, Shendure, Jay
Publicado no Science (2015)

Yeast Sterol Regulatory Element-binding Protein (SREBP) Cleavage Requires Cdc48 and Dsc5, a Ubiquitin Regulatory X Domain-containing Subunit of the Golgi Dsc E3 Ligase

Por Stewart, Emerson V., Lloyd, S. Julie-Ann, Burg, John S., Nwosu, Christine C., Lintner, Robert E., Daza, Riza, Russ, Carsten, Ponchner, Karen, Nusbaum, Chad, Espenshade, Peter J.
Publicado em 2012

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

Por Adey, Andrew, Kitzman, Jacob O., Burton, Joshua N., Daza, Riza, Kumar, Akash, Christiansen, Lena, Ronaghi, Mostafa, Amini, Sasan, L. Gunderson, Kevin, Steemers, Frank J., Shendure, Jay
Publicado no Genome Res (2014)

Copy-Number Variation and False Positive Prenatal Aneuploidy Screening Results

Por Snyder, Matthew W., Simmons, LaVone E., Kitzman, Jacob O., Coe, Bradley P., Henson, Jessica M., Daza, Riza M., Eichler, Evan E., Shendure, Jay, Gammill, Hilary S.
Publicado no N Engl J Med (2015)

Fragment Length of Circulating Tumor DNA

Por Underhill, Hunter R., Kitzman, Jacob O., Hellwig, Sabine, Welker, Noah C., Daza, Riza, Baker, Daniel N., Gligorich, Keith M., Rostomily, Robert C., Bronner, Mary P., Shendure, Jay
Publicado no PLoS Genet (2016)

Tsukamurella strandjordae sp. nov., a Proposed New Species Causing Sepsis

Por Kattar, Mireille M., Cookson, Brad T., Carlson, LaDonna C., Stiglich, Susan K., Schwartz, Margot A., Nguyen, Trang T., Daza, Riza, Wallis, Carolyn K., Yarfitz, Stuart L., Coyle, Marie B.
Publicado em 2001

Decoding long nanopore sequencing reads of natural DNA

Por Laszlo, Andrew H., Derrington, Ian M., Ross, Brian C., Brinkerhoff, Henry, Adey, Andrew, Nova, Ian C., Craig, Jonathan M., Langford, Kyle W., Samson, Jenny Mae, Daza, Riza, Doering, Kenji, Shendure, Jay, Gundlach, Jens H.
Publicado em 2014

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

Por Gnerre, Sante, MacCallum, Iain, Przybylski, Dariusz, Ribeiro, Filipe J., Burton, Joshua N., Walker, Bruce J., Sharpe, Ted, Hall, Giles, Shea, Terrance P., Sykes, Sean, Berlin, Aaron M., Aird, Daniel, Costello, Maura, Daza, Riza, Williams, Louise, Nicol, Robert, Gnirke, Andreas, Nusbaum, Chad, Lander, Eric S., Jaffe, David B.
Publicado em 2011

A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454

Por Lennon, Niall J, Lintner, Robert E, Anderson, Scott, Alvarez, Pablo, Barry, Andrew, Brockman, William, Daza, Riza, Erlich, Rachel L, Giannoukos, Georgia, Green, Lisa, Hollinger, Andrew, Hoover, Cindi A, Jaffe, David B, Juhn, Frank, McCarthy, Danielle, Perrin, Danielle, Ponchner, Karen, Powers, Taryn L, Rizzolo, Kamran, Robbins, Dana, Ryan, Elizabeth, Russ, Carsten, Sparrow, Todd, Stalker, John, Steelman, Scott, Weiand, Michael, Zimmer, Andrew, Henn, Matthew R, Nusbaum, Chad, Nicol, Robert
Publicado em 2010

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

Por Hamilton, Eileen P, Kapusta, Aurélie, Huvos, Piroska E, Bidwell, Shelby L, Zafar, Nikhat, Tang, Haibao, Hadjithomas, Michalis, Krishnakumar, Vivek, Badger, Jonathan H, Caler, Elisabet V, Russ, Carsten, Zeng, Qiandong, Fan, Lin, Levin, Joshua Z, Shea, Terrance, Young, Sarah K, Hegarty, Ryan, Daza, Riza, Gujja, Sharvari, Wortman, Jennifer R, Birren, Bruce W, Nusbaum, Chad, Thomas, Jainy, Carey, Clayton M, Pritham, Ellen J, Feschotte, Cédric, Noto, Tomoko, Mochizuki, Kazufumi, Papazyan, Romeo, Taverna, Sean D, Dear, Paul H, Cassidy-Hanley, Donna M, Xiong, Jie, Miao, Wei, Orias, Eduardo, Coyne, Robert S
Publicado no eLife (2016)

Mutations causing medullary cystic kidney disease type 1 (MCKD1) lie in a large VNTR in MUC1 missed by massively parallel sequencing

Por Kirby, Andrew, Gnirke, Andreas, Jaffe, David B., Barešová, Veronika, Pochet, Nathalie, Blumenstiel, Brendan, Ye, Chun, Aird, Daniel, Stevens, Christine, Robinson, James T., Cabili, Moran N., Gat-Viks, Irit, Kelliher, Edward, Daza, Riza, DeFelice, Matthew, Hůlková, Helena, Sovová, Jana, Vylet’al, Petr, Antignac, Corinne, Guttman, Mitchell, Handsaker, Robert E., Perrin, Danielle, Steelman, Scott, Sigurdsson, Snaevar, Scheinman, Steven J., Sougnez, Carrie, Cibulskis, Kristian, Parkin, Melissa, Green, Todd, Rossin, Elizabeth, Zody, Michael C., Xavier, Ramnik J., Pollak, Martin R., Alper, Seth L., Lindblad-Toh, Kerstin, Gabriel, Stacey, Hart, P. Suzanne, Regev, Aviv, Nusbaum, Chad, Kmoch, Stanislav, Bleyer, Anthony J., Lander, Eric S., Daly, Mark J.
Publicado em 2013