Approaches to Fungal Genome Annotation

od Haas, Brian J., Zeng, Qiandong, Pearson, Matthew D., Cuomo, Christina A., Wortman, Jennifer R.
Wydane 2011

RNA-Seq Profile reveals Th-1 and Th-17 Type of Immune Responses in Mice Infected Systemically with Aspergillus fumigatus

od Shankar, Jata, Cerqueira, Gustavo C., Wortman, Jennifer R., Clemons, Karl V., Stevens, David A.
Wydane w Mycopathologia (2018)

Comparative analysis of programmed cell death pathways in filamentous fungi

od Fedorova, Natalie D, Badger, Jonathan H, Robson, Geoff D, Wortman, Jennifer R, Nierman, William C
Wydane 2005

New resources for functional analysis of omics data for the genus <it>Aspergillus</it>

od Meyer Vera, Cerqueira Gustavo C, Crabtree Jonathan, Nitsche Benjamin M, Ram Arthur FJ, Wortman Jennifer R
Wydane 2011-10-01

New resources for functional analysis of omics data for the genus Aspergillus

od Nitsche, Benjamin M, Crabtree, Jonathan, Cerqueira, Gustavo C, Meyer, Vera, Ram, Arthur FJ, Wortman, Jennifer R
Wydane 2011

Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily

od Goldberg, Jonathan M., Griggs, Allison D., Smith, Janet L., Haas, Brian J., Wortman, Jennifer R., Zeng, Qiandong
Wydane 2013

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

od Inglis, Diane O, Binkley, Jonathan, Skrzypek, Marek S, Arnaud, Martha B, Cerqueira, Gustavo C, Shah, Prachi, Wymore, Farrell, Wortman, Jennifer R, Sherlock, Gavin
Wydane 2013

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

od Haas, Brian J, Salzberg, Steven L, Zhu, Wei, Pertea, Mihaela, Allen, Jonathan E, Orvis, Joshua, White, Owen, Buell, C Robin, Wortman, Jennifer R
Wydane 2008

Transcriptional Regulation of Chemical Diversity in Aspergillus fumigatus by LaeA

od Perrin, Robyn M, Fedorova, Natalie D, Bok, Jin Woo, Cramer, Robert A, Wortman, Jennifer R, Kim, H. Stanley, Nierman, William C, Keller, Nancy P
Wydane 2007

Identification and characterization of a p53 homologue in Drosophila melanogaster

od Jin, Shengkan, Martinek, Sebastian, Joo, Woo S., Wortman, Jennifer R., Mirkovic, Nebojsa, Sali, Andrej, Yandell, Mark D., Pavletich, Nikola P., Young, Michael W., Levine, Arnold J.
Wydane 2000

Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis

od Ayele, Mulu, Haas, Brian J., Kumar, Nikhil, Wu, Hank, Xiao, Yongli, Van Aken, Susan, Utterback, Teresa R., Wortman, Jennifer R., White, Owen R., Town, Christopher D.
Wydane 2005

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release

od Haas, Brian J, Wortman, Jennifer R, Ronning, Catherine M, Hannick, Linda I, Smith, Roger K, Maiti, Rama, Chan, Agnes P, Yu, Chunhui, Farzad, Maryam, Wu, Dongying, White, Owen, Town, Christopher D
Wydane 2005

Comparative Genomics of Brassica oleracea and Arabidopsis thaliana Reveal Gene Loss, Fragmentation, and Dispersal after Polyploidy

od Town, Christopher D., Cheung, Foo, Maiti, Rama, Crabtree, Jonathan, Haas, Brian J., Wortman, Jennifer R., Hine, Erin E., Althoff, Ryan, Arbogast, Tamara S., Tallon, Luke J., Vigouroux, Marielle, Trick, Martin, Bancroft, Ian
Wydane 2006

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

od Cerqueira, Gustavo C., Arnaud, Martha B., Inglis, Diane O., Skrzypek, Marek S., Binkley, Gail, Simison, Matt, Miyasato, Stuart R., Binkley, Jonathan, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Sherlock, Gavin, Wortman, Jennifer R.
Wydane 2014

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

od Arnaud, Martha B., Chibucos, Marcus C., Costanzo, Maria C., Crabtree, Jonathan, Inglis, Diane O., Lotia, Adil, Orvis, Joshua, Shah, Prachi, Skrzypek, Marek S., Binkley, Gail, Miyasato, Stuart R., Wortman, Jennifer R., Sherlock, Gavin
Wydane 2010

Annotation of the Arabidopsis Genome

od Wortman, Jennifer R., Haas, Brian J., Hannick, Linda I., Smith, Roger K., Maiti, Rama, Ronning, Catherine M., Chan, Agnes P., Yu, Chunhui, Ayele, Mulu, Whitelaw, Catherine A., White, Owen R., Town, Christopher D.
Wydane 2003

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

od Haas, Brian J., Delcher, Arthur L., Mount, Stephen M., Wortman, Jennifer R., Smith, Roger K., Hannick, Linda I., Maiti, Rama, Ronning, Catherine M., Rusch, Douglas B., Town, Christopher D., Salzberg, Steven L., White, Owen
Wydane 2003

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

od Arnaud, Martha B., Cerqueira, Gustavo C., Inglis, Diane O., Skrzypek, Marek S., Binkley, Jonathan, Chibucos, Marcus C., Crabtree, Jonathan, Howarth, Clinton, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin, Wortman, Jennifer R.
Wydane 2012

Comparative Genomics of Recent Shiga Toxin-Producing Escherichia coli O104:H4: Short-Term Evolution of an Emerging Pathogen

od Grad, Yonatan H., Godfrey, Paul, Cerquiera, Gustavo C., Mariani-Kurkdjian, Patricia, Gouali, Malika, Bingen, Edouard, Shea, Terrence P., Haas, Brian J., Griggs, Allison, Young, Sarah, Zeng, Qiandong, Lipsitch, Marc, Waldor, Matthew K., Weill, François-Xavier, Wortman, Jennifer R., Hanage, William P.
Wydane 2013

Draft genome sequence of the ricin-producing oilseed castor bean

od Chan, Agnes P., Crabtree, Jonathan, Zhao, Qi, Lorenzi, Hernan, Orvis, Joshua, Puiu, Daniela, Melake-Berhan, Admasu, Jones, Kristine M., Redman, Julia, Chen, Grace, Cahoon, Edgar B., Gedil, Melaku, Stanke, Mario, Haas, Brian J., Wortman, Jennifer R., Fraser-Liggett, Claire M., Ravel, Jacques, Rabinowicz, Pablo D.
Wydane 2010