AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints

Por Stanke, Mario, Morgenstern, Burkhard
Publicado em 2005

WebAUGUSTUS—a web service for training AUGUSTUS and predicting genes in eukaryotes

Por Hoff, Katharina J., Stanke, Mario
Publicado em 2013

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome

Por Stanke, Mario, Tzvetkova, Ana, Morgenstern, Burkhard
Publicado em 2006

AUGUSTUS: a web server for gene finding in eukaryotes

Por Stanke, Mario, Steinkamp, Rasmus, Waack, Stephan, Morgenstern, Burkhard
Publicado em 2004

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

Por Stanke, Mario, Schöffmann, Oliver, Morgenstern, Burkhard, Waack, Stephan
Publicado em 2006

Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

Por Keller, Oliver, Odronitz, Florian, Stanke, Mario, Kollmar, Martin, Waack, Stephan
Publicado em 2008

AUGUSTUS: ab initio prediction of alternative transcripts

Por Stanke, Mario, Keller, Oliver, Gunduz, Irfan, Hayes, Alec, Waack, Stephan, Morgenstern, Burkhard
Publicado em 2006

Detection of viral sequence fragments of HIV-1 subfamilies yet unknown

Por Unterthiner, Thomas, Schultz, Anne-Kathrin, Bulla, Jan, Morgenstern, Burkhard, Stanke, Mario, Bulla, Ingo
Publicado em 2011

ClassyFlu: Classification of Influenza A Viruses with Discriminatively Trained Profile-HMMs

Por Van der Auwera, Sandra, Bulla, Ingo, Ziller, Mario, Pohlmann, Anne, Harder, Timm, Stanke, Mario
Publicado em 2014

Comparative Analysis of Nuclear tRNA Genes of Nasonia vitripennis with Apis mellifera and Other Sequenced Arthropods

Por Behura, Susanta K., Stanke, Mario, Desjardins, Christopher A., Werren, John H., Severson, David W.
Publicado em 2010

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes

Por Schultz, Anne-Kathrin, Zhang, Ming, Leitner, Thomas, Kuiken, Carla, Korber, Bette, Morgenstern, Burkhard, Stanke, Mario
Publicado em 2006

Discovery and revision of Arabidopsis genes by proteogenomics

Por Castellana, Natalie E., Payne, Samuel H., Shen, Zhouxin, Stanke, Mario, Bafna, Vineet, Briggs, Steven P.
Publicado em 2008

jpHMM: Improving the reliability of recombination prediction in HIV-1

Por Schultz, Anne-Kathrin, Zhang, Ming, Bulla, Ingo, Leitner, Thomas, Korber, Bette, Morgenstern, Burkhard, Stanke, Mario
Publicado em 2009

jpHMM: improving the reliability of recombination prediction in HIV-1

Por Schultz, Anne-Kathrin, Zhang, Ming, Bulla, Ingo, Leitner, Thomas, Korber, Bette, Morgenstern, Burkhard, Stanke, Mario
Publicado em 2010

Design of a tobacco exon array with application to investigate the differential cadmium accumulation property in two tobacco varieties

Por Martin, Florian, Bovet, Lucien, Cordier, Audrey, Stanke, Mario, Gunduz, Irfan, Peitsch, Manuel C, Ivanov, Nikolai V
Publicado em 2012

jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1

Por Zhang, Ming, Schultz, Anne-Kathrin, Calef, Charles, Kuiken, Carla, Leitner, Thomas, Korber, Bette, Morgenstern, Burkhard, Stanke, Mario
Publicado em 2006

HIV classification using the coalescent theory

Por Bulla, Ingo, Schultz, Anne-Kathrin, Schreiber, Fabian, Zhang, Ming, Leitner, Thomas, Korber, Bette, Morgenstern, Burkhard, Stanke, Mario
Publicado em 2010

jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus

Por Schultz, Anne-Kathrin, Bulla, Ingo, Abdou-Chekaraou, Mariama, Gordien, Emmanuel, Morgenstern, Burkhard, Zoaulim, Fabien, Dény, Paul, Stanke, Mario
Publicado em 2012

CRF-based models of protein surfaces improve protein-protein interaction site predictions

Por Dong, Zhijie, Wang, Keyu, Linh Dang, Truong Khanh, Gültas, Mehmet, Welter, Marlon, Wierschin, Torsten, Stanke, Mario, Waack, Stephan
Publicado em 2014

The role of recombination in the emergence of a complex and dynamic HIV epidemic

Por Zhang, Ming, Foley, Brian, Schultz, Anne-Kathrin, Macke, Jennifer P, Bulla, Ingo, Stanke, Mario, Morgenstern, Burkhard, Korber, Bette, Leitner, Thomas
Publicado em 2010