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A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes

BACKGROUND: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequence S to the multiple alignment or profile as a whole, S is compared and aligned to individual sequences from A. Within th...

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Detalhes bibliográficos
Main Authors: Schultz, Anne-Kathrin, Zhang, Ming, Leitner, Thomas, Kuiken, Carla, Korber, Bette, Morgenstern, Burkhard, Stanke, Mario
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2006
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC1525204/
https://ncbi.nlm.nih.gov/pubmed/16716226
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-7-265
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