The effect of sequencing errors on metagenomic gene prediction

Tekijä Hoff, Katharina J
Julkaistu 2009

WebAUGUSTUS—a web service for training AUGUSTUS and predicting genes in eukaryotes

Tekijä Hoff, Katharina J., Stanke, Mario
Julkaistu 2013

Orphelia: predicting genes in metagenomic sequencing reads

Tekijä Hoff, Katharina J., Lingner, Thomas, Meinicke, Peter, Tech, Maike
Julkaistu 2009

VARUS: sampling complementary RNA reads from the sequence read archive

Tekijä Stanke, Mario, Bruhn, Willy, Becker, Felix, Hoff, Katharina J.
Julkaisussa BMC Bioinformatics (2019)

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS

Tekijä Hoff, Katharina J., Lange, Simone, Lomsadze, Alexandre, Borodovsky, Mark, Stanke, Mario
Julkaisussa Bioinformatics (2016)

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database

Tekijä Brůna, Tomáš, Hoff, Katharina J, Lomsadze, Alexandre, Stanke, Mario, Borodovsky, Mark
Julkaisussa NAR Genom Bioinform (2021)

Gene prediction in metagenomic fragments: A large scale machine learning approach

Tekijä Morgenstern Burkhard, Daniel Rolf, Lingner Thomas, Tech Maike, Hoff Katharina J, Meinicke Peter
Julkaistu 2008-04-01

Gene prediction in metagenomic fragments: A large scale machine learning approach

Tekijä Hoff, Katharina J, Tech, Maike, Lingner, Thomas, Daniel, Rolf, Morgenstern, Burkhard, Meinicke, Peter
Julkaistu 2008

Non-invasive and label-free 3D-visualization shows in vivo oligomerization of the staphylococcal alkaline shock protein 23 (Asp23)

Tekijä Petersen, Inga, Schlüter, Rabea, Hoff, Katharina J., Liebscher, Volkmar, Bange, Gert, Riedel, Katharina, Pané-Farré, Jan
Julkaisussa Sci Rep (2020)

Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation

Tekijä Sheffer, Monica M, Hoppe, Anica, Krehenwinkel, Henrik, Uhl, Gabriele, Kuss, Andreas W, Jensen, Lars, Jensen, Corinna, Gillespie, Rosemary G, Hoff, Katharina J, Prost, Stefan
Julkaisussa Gigascience (2021)

Pseudomonas Strains Induce Transcriptional and Morphological Changes and Reduce Root Colonization of Verticillium spp.

Tekijä Harting, Rebekka, Nagel, Alexandra, Nesemann, Kai, Höfer, Annalena M., Bastakis, Emmanouil, Kusch, Harald, Stanley, Claire E., Stöckli, Martina, Kaever, Alexander, Hoff, Katharina J., Stanke, Mario, deMello, Andrew J., Künzler, Markus, Haney, Cara H., Braus-Stromeyer, Susanna A., Braus, Gerhard H.
Julkaisussa Front Microbiol (2021)

A 20‐kb lineage‐specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum

Tekijä Harting, Rebekka, Starke, Jessica, Kusch, Harald, Pöggeler, Stefanie, Maurus, Isabel, Schlüter, Rabea, Landesfeind, Manuel, Bulla, Ingo, Nowrousian, Minou, de Jonge, Ronnie, Stahlhut, Gertrud, Hoff, Katharina J., Aßhauer, Kathrin P., Thürmer, Andrea, Stanke, Mario, Daniel, Rolf, Morgenstern, Burkhard, Thomma, Bart P. H. J., Kronstad, James W., Braus‐Stromeyer, Susanna A., Braus, Gerhard H.
Julkaisussa Mol Plant Pathol (2021)

The genomic basis of evolutionary differentiation among honey bees

Tekijä Fouks, Bertrand, Brand, Philipp, Nguyen, Hung N., Herman, Jacob, Camara, Francisco, Ence, Daniel, Hagen, Darren E., Hoff, Katharina J., Nachweide, Stefanie, Romoth, Lars, Walden, Kimberly K.O., Guigo, Roderic, Stanke, Mario, Narzisi, Giuseppe, Yandell, Mark, Robertson, Hugh M., Koeniger, Nikolaus, Chantawannakul, Panuwan, Schatz, Michael C., Worley, Kim C., Robinson, Gene E., Elsik, Christine G., Rueppell, Olav
Julkaisussa Genome Res (2021)

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

Tekijä Dasmahapatra, Kanchon K, Walters, James R., Briscoe, Adriana D., Davey, John W., Whibley, Annabel, Nadeau, Nicola J., Zimin, Aleksey V., Hughes, Daniel S. T., Ferguson, Laura C., Martin, Simon H., Salazar, Camilo, Lewis, James J., Adler, Sebastian, Ahn, Seung-Joon, Baker, Dean A., Baxter, Simon W., Chamberlain, Nicola L., Chauhan, Ritika, Counterman, Brian A., Dalmay, Tamas, Gilbert, Lawrence E., Gordon, Karl, Heckel, David G., Hines, Heather M., Hoff, Katharina J., Holland, Peter W.H., Jacquin-Joly, Emmanuelle, Jiggins, Francis M., Jones, Robert T., Kapan, Durrell D., Kersey, Paul, Lamas, Gerardo, Lawson, Daniel, Mapleson, Daniel, Maroja, Luana S., Martin, Arnaud, Moxon, Simon, Palmer, William J., Papa, Riccardo, Papanicolaou, Alexie, Pauchet, Yannick, Ray, David A., Rosser, Neil, Salzberg, Steven L., Supple, Megan A., Surridge, Alison, Tenger-Trolander, Ayse, Vogel, Heiko, Wilkinson, Paul A., Wilson, Derek, Yorke, James A., Yuan, Furong, Balmuth, Alexi L., Eland, Cathlene, Gharbi, Karim, Thomson, Marian, Gibbs, Richard A., Han, Yi, Jayaseelan, Joy C., Kovar, Christie, Mathew, Tittu, Muzny, Donna M., Ongeri, Fiona, Pu, Ling-Ling, Qu, Jiaxin, Thornton, Rebecca L., Worley, Kim C., Wu, Yuan-Qing, Linares, Mauricio, Blaxter, Mark L., Constant, Richard H. ffrench, Joron, Mathieu, Kronforst, Marcus R., Mullen, Sean P., Reed, Robert D., Scherer, Steven E., Richards, Stephen, Mallet, James, McMillan, W. Owen, Jiggins, Chris D.
Julkaistu 2012