Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs

Por Scholz, Matthew, Lo, Chien-Chi, Chain, Patrick S. G.
Publicado em 2014

Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes

Por Xie, Gary, Lo, Chien-Chi, Scholz, Matthew, Chain, Patrick S. G.
Publicado em 2014

Draft Genome Sequence of Bacillus altitudinis YNP4-TSU, Isolated from Yellowstone National Park

Por OHair, Joshua A., Li, Hui, Thapa, Santosh, Scholz, Matthew, Zhou, Suping
Publicado no Genome Announc (2017)

High-Salt Conditions Alter Transcription of Helicobacter pylori Genes Encoding Outer Membrane Proteins

Por Loh, John T., Beckett, Amber C., Scholz, Matthew B., Cover, Timothy L.
Publicado no Infect Immun (2018)

SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis

Por Johnson, Benjamin K., Scholz, Matthew B., Teal, Tracy K., Abramovitch, Robert B.
Publicado no BMC Bioinformatics (2016)

Draft Genome Sequences of Three Cellulolytic Bacillus licheniformis Strains Isolated from Imperial Geyser, Amphitheater Springs, and Whiterock Springs inside Yellowstone National P...

Por O' Hair, Joshua A., Li, Hui, Thapa, Santosh, Scholz, Matthew, Zhou, Suping
Publicado no Genome Announc (2017)

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures

Por Freitas, Tracey Allen K., Li, Po-E, Scholz, Matthew B., Chain, Patrick S. G.
Publicado no Nucleic Acids Res (2015)

Draft Genome Sequence of Bacillus licheniformis Strain YNP1-TSU Isolated from Whiterock Springs in Yellowstone National Park

Por O'Hair, Joshua A., Li, Hui, Thapa, Santosh, Scholz, Matthew B., Zhou, Suping
Publicado no Genome Announc (2017)

In Vitro and In Vivo Evaluations of the Activities of Lauric Acid Monoester Formulations against Staphylococcus aureus

Por Rouse, Mark S., Rotger, Margalida, Piper, Kerryl E., Steckelberg, James M., Scholz, Matthew, Andrews, Jeffrey, Patel, Robin
Publicado em 2005

Multi-Omic Analysis of the Microbiome and Metabolome in Healthy Subjects Reveals Microbiome-Dependent Relationships Between Diet and Metabolites

Por Tang, Zheng-Zheng, Chen, Guanhua, Hong, Qilin, Huang, Shi, Smith, Holly M., Shah, Rachana D., Scholz, Matthew, Ferguson, Jane F.
Publicado no Front Genet (2019)

Ultrastructure and Composition of the Nannochloropsis gaditana Cell Wall

Por Scholz, Matthew J., Weiss, Taylor L., Jinkerson, Robert E., Jing, Jia, Roth, Robyn, Goodenough, Ursula, Posewitz, Matthew C., Gerken, Henri G.
Publicado no Eukaryot Cell (2014)


Regulatory Considerations for Gene Therapy Products in the US, EU, and Japan


Por Halioua-Haubold, Celine-Lea, Peyer, James G., Smith, James A., Arshad, Zeeshaan, Scholz, Matthew, Brindley, David A., MacLaren, Robert E.
Publicado no Yale J Biol Med (2017)

Effect of environmental salt concentration on the Helicobacter pylori exoproteome

Por Caston, Rhonda R., Loh, John T., Voss, Bradley J., McDonald, W. Hayes, Scholz, Matthew B., McClain, Mark S., Cover, Timothy L.
Publicado no J Proteomics (2019)

Facile, High Quality Sequencing of Bacterial Genomes from Small Amounts of DNA

Por Vuyisich, Momchilo, Arefin, Ayesha, Davenport, Karen, Feng, Shihai, Gleasner, Cheryl, McMurry, Kim, Parson-Quintana, Beverly, Price, Jennifer, Scholz, Matthew, Chain, Patrick
Publicado no Int J Genomics (2014)

Re-evaluation of a novel resistance mutation in eccC(5) of the ESX-5 secretion system in ofloxacin-resistant Mycobacterium tuberculosis

Por Blackman, Amondrea, Morrison, Bob, Maruri, Fernanda, van der Heijden, Yuri, Nochowicz, Cindy Hager, Guo, Yan, Scholz, Matthew, Rustad, Tige, Sherman, David R, Sterling, Timothy R
Publicado no J Antimicrob Chemother (2020)

Modification of the Gastric Mucosal Microbiota by a Strain-Specific Helicobacter pylori Oncoprotein and Carcinogenic Histologic Phenotype

Por Noto, Jennifer M., Zackular, Joseph P., Varga, Matthew G., Delgado, Alberto, Romero-Gallo, Judith, Scholz, Matthew B., Piazuelo, M. Blanca, Skaar, Eric P., Peek, Richard M.
Publicado no mBio (2019)

Endogenous double-stranded Alu RNA elements stimulate IFN-responses in relapsing remitting multiple sclerosis

Por Heinrich, Maxwell J., Purcell, Caroline A, Pruijssers, Andrea J., Zhao, Yang, Spurlock, Charles F., Sriram, Subramaniam, Ogden, Kristen M, Dermody, Terence S., Scholz, Matthew B., Crooke, Philip S., Karijolich, John, Aune, Thomas M.
Publicado no J Autoimmun (2019)

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

Por Dodsworth, Jeremy A., Blainey, Paul C., Murugapiran, Senthil K., Swingley, Wesley D., Ross, Christian A., Tringe, Susannah G., Chain, Patrick S. G., Scholz, Matthew B., Lo, Chien-Chi, Raymond, Jason, Quake, Stephen R., Hedlund, Brian P.
Publicado em 2013

Draft Genome Assembly of Acinetobacter baumannii ATCC 19606

Por Davenport, Karen W., Daligault, Hajnalka E., Minogue, Timothy D., Bruce, David C., Chain, Patrick S. G., Coyne, Susan R., Jaissle, James G., Koroleva, Galina I., Ladner, Jason T., Li, Po-E, Palacios, Gustavo F., Scholz, Matthew B., Teshima, Hazuki, Johnson, Shannon L.
Publicado em 2014

High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella...

Por Woo, Hannah L., DeAngelis, Kristen M., Teshima, Hazuki, Davenport, Karen, Daligault, Hajnalka, Erkkila, Tracy, Goodwin, Lynne, Gu, Wei, Lo, Chien-Chi, Munk, Christine, Scholz, Matthew, Xu, Yan, Chain, Patrick, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Simmons, Blake A., Hazen, Terry C.
Publicado no Genome Announc (2017)