Viromes, Not Gene Markers, for Studying Double-Stranded DNA Virus Communities

od Sullivan, Matthew B.
Wydane w J Virol (2014)

Emerging methods to study bacteriophage infection at the single-cell level

od Dang, Vinh T., Sullivan, Matthew B.
Wydane w Front Microbiol (2014)

The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

od Hurwitz, Bonnie L., Sullivan, Matthew B.
Wydane 2013

Six Pseudoalteromonas Strains Isolated from Surface Waters of Kabeltonne, Offshore Helgoland, North Sea

od Duhaime, Melissa B., Wichels, Antje, Sullivan, Matthew B.
Wydane w Genome Announc (2016)

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

od Brum, Jennifer R, Schenck, Ryan O, Sullivan, Matthew B
Wydane 2013

Metabolic reprogramming by viruses in the sunlit and dark ocean

od Hurwitz, Bonnie L, Hallam, Steven J, Sullivan, Matthew B
Wydane 2013

Depth-stratified functional and taxonomic niche specialization in the ‘core' and ‘flexible' Pacific Ocean Virome

od Hurwitz, Bonnie L, Brum, Jennifer R, Sullivan, Matthew B
Wydane w ISME J (2015)

Dietary energy drives the dynamic response of bovine rumen viral communities

od Anderson, Christopher L., Sullivan, Matthew B., Fernando, Samodha C.
Wydane w Microbiome (2017)

Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method

od Duhaime, Melissa B, Deng, Li, Poulos, Bonnie T, Sullivan, Matthew B
Wydane 2012

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

od Hurwitz, Bonnie L, Deng, Li, Poulos, Bonnie T, Sullivan, Matthew B
Wydane 2013

VirSorter: mining viral signal from microbial genomic data

od Roux, Simon, Enault, Francois, Hurwitz, Bonnie L., Sullivan, Matthew B.
Wydane w PeerJ (2015)

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

od Roux, Simon, Hallam, Steven J, Woyke, Tanja, Sullivan, Matthew B
Wydane w eLife (2015)

Cultivated Single-Stranded DNA Phages That Infect Marine Bacteroidetes Prove Difficult To Detect with DNA-Binding Stains

od Holmfeldt, Karin, Odić, Duško, Sullivan, Matthew B., Middelboe, Mathias, Riemann, Lasse
Wydane 2012

Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages

od Roux, Simon, Enault, François, Ravet, Viviane, Pereira, Olivier, Sullivan, Matthew B.
Wydane w Front Microbiol (2015)

Lysogeny in nature: mechanisms, impact and ecology of temperate phages

od Howard-Varona, Cristina, Hargreaves, Katherine R, Abedon, Stephen T, Sullivan, Matthew B
Wydane w ISME J (2017)

Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses

od Hurwitz, Bonnie L., Westveld, Anton H., Brum, Jennifer R., Sullivan, Matthew B.
Wydane 2014

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity

od Roux, Simon, Emerson, Joanne B., Eloe-Fadrosh, Emiley A., Sullivan, Matthew B.
Wydane w PeerJ (2017)

Smoking is associated with quantifiable differences in the human lung DNA virome and metabolome

od Gregory, Ann C., Sullivan, Matthew B., Segal, Leopoldo N., Keller, Brian C.
Wydane w Respir Res (2018)

Improving Phage-Biofilm In Vitro Experimentation

od Abedon, Stephen T., Danis-Wlodarczyk, Katarzyna M., Wozniak, Daniel J., Sullivan, Matthew B.
Wydane w Viruses (2021)

Three Prochlorococcus Cyanophage Genomes: Signature Features and Ecological Interpretations

od Sullivan, Matthew B, Coleman, Maureen L, Weigele, Peter, Rohwer, Forest, Chisholm, Sallie W
Wydane 2005