Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads

Por Roux, Simon, Krupovic, Mart, Poulet, Axel, Debroas, Didier, Enault, François
Publicado em 2012

Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences

Por Roux, Simon, Krupovic, Mart, Debroas, Didier, Forterre, Patrick, Enault, François
Publicado em 2013

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

Por Roux, Simon, Tournayre, Jeremy, Mahul, Antoine, Debroas, Didier, Enault, François
Publicado em 2014

VirSorter: mining viral signal from microbial genomic data

Por Roux, Simon, Enault, Francois, Hurwitz, Bonnie L., Sullivan, Matthew B.
Publicado no PeerJ (2015)

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

Por Roux, Simon, Hallam, Steven J, Woyke, Tanja, Sullivan, Matthew B
Publicado no eLife (2015)

Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages

Por Roux, Simon, Enault, François, Ravet, Viviane, Pereira, Olivier, Sullivan, Matthew B.
Publicado no Front Microbiol (2015)

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity

Por Roux, Simon, Emerson, Joanne B., Eloe-Fadrosh, Emiley A., Sullivan, Matthew B.
Publicado no PeerJ (2017)

iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure

Por Bolduc, Benjamin, Youens-Clark, Ken, Roux, Simon, Hurwitz, Bonnie L, Sullivan, Matthew B
Publicado no ISME J (2017)

Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses

Por Enault, François, Briet, Arnaud, Bouteille, Léa, Roux, Simon, Sullivan, Matthew B, Petit, Marie-Agnès
Publicado no ISME J (2017)

vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria

Por Bolduc, Benjamin, Jang, Ho Bin, Doulcier, Guilhem, You, Zhi-Qiang, Roux, Simon, Sullivan, Matthew B.
Publicado no PeerJ (2017)

Comparative Omics and Trait Analyses of Marine Pseudoalteromonas Phages Advance the Phage OTU Concept

Por Duhaime, Melissa B., Solonenko, Natalie, Roux, Simon, Verberkmoes, Nathan C., Wichels, Antje, Sullivan, Matthew B.
Publicado no Front Microbiol (2017)

Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics

Por Roux, Simon, Chan, Leong-Keat, Egan, Rob, Malmstrom, Rex R., McMahon, Katherine D., Sullivan, Matthew B.
Publicado no Nat Commun (2017)

Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlands

Por Quaiser, Achim, Dufresne, Alexis, Ballaud, Flore, Roux, Simon, Zivanovic, Yvan, Colombet, Jonathan, Sime-Ngando, Télesphore, Francez, André-Jean
Publicado no Front Microbiol (2015)

Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics

Por Roux, Simon, Enault, Francois, Robin, Agnès, Ravet, Viviane, Personnic, Sébastien, Theil, Sébastien, Colombet, Jonathan, Sime-Ngando, Télesphore, Debroas, Didier
Publicado em 2012

Diversity of environmental single-stranded DNA phages revealed by PCR amplification of the partial major capsid protein

Por Hopkins, Max, Kailasan, Shweta, Cohen, Allison, Roux, Simon, Tucker, Kimberly Pause, Shevenell, Amelia, Agbandje-McKenna, Mavis, Breitbart, Mya
Publicado em 2014

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus

Por Howard-Varona, Cristina, Roux, Simon, Dore, Hugo, Solonenko, Natalie E, Holmfeldt, Karin, Markillie, Lye M, Orr, Galya, Sullivan, Matthew B
Publicado no ISME J (2017)

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus

Por Howard-Varona, Cristina, Roux, Simon, Dore, Hugo, Solonenko, Natalie E, Holmfeldt, Karin, Markillie, Lye M, Orr, Galya, Sullivan, Matthew B
Publicado no ISME J (2017)

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

Por Roux, Simon, Hawley, Alyse K, Torres Beltran, Monica, Scofield, Melanie, Schwientek, Patrick, Stepanauskas, Ramunas, Woyke, Tanja, Hallam, Steven J, Sullivan, Matthew B
Publicado em 2014

Putative archaeal viruses from the mesopelagic ocean

Por Vik, Dean R., Roux, Simon, Brum, Jennifer R., Bolduc, Ben, Emerson, Joanne B., Padilla, Cory C., Stewart, Frank J., Sullivan, Matthew B.
Publicado no PeerJ (2017)

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses

Por Roux, Simon, Solonenko, Natalie E., Dang, Vinh T., Poulos, Bonnie T., Schwenck, Sarah M., Goldsmith, Dawn B., Coleman, Maureen L., Breitbart, Mya, Sullivan, Matthew B.
Publicado no PeerJ (2016)