Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis

Por Bolduc, Benjamin, Wirth, Jennifer F, Mazurie, Aurélien, Young, Mark J
Publicado no ISME J (2015)

The Prevalence of STIV c92-Like Proteins in Acidic Thermal Environments

Por Snyder, Jamie C., Bolduc, Benjamin, Bateson, Mary M., Young, Mark J.
Publicado em 2011

iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure

Por Bolduc, Benjamin, Youens-Clark, Ken, Roux, Simon, Hurwitz, Bonnie L, Sullivan, Matthew B
Publicado no ISME J (2017)

Cenote-Taker 2 democratizes virus discovery and sequence annotation

Por Tisza, Michael J, Belford, Anna K, Domínguez-Huerta, Guillermo, Bolduc, Benjamin, Buck, Christopher B
Publicado no Virus Evol (2020)

vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria

Por Bolduc, Benjamin, Jang, Ho Bin, Doulcier, Guilhem, You, Zhi-Qiang, Roux, Simon, Sullivan, Matthew B.
Publicado no PeerJ (2017)

The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut

Por Gregory, Ann C., Zablocki, Olivier, Zayed, Ahmed A., Howell, Allison, Bolduc, Benjamin, Sullivan, Matthew B.
Publicado no Cell Host Microbe (2020)

Identification of Novel Positive-Strand RNA Viruses by Metagenomic Analysis of Archaea-Dominated Yellowstone Hot Springs

Por Bolduc, Benjamin, Shaughnessy, Daniel P., Wolf, Yuri I., Koonin, Eugene V., Roberto, Francisco F., Young, Mark
Publicado em 2012

Reply to “Codon Usage Frequency of RNA Virus Genomes from High-Temperature Acidic-Environment Metagenomes”

Por Young, Mark, Bolduc, Benjamin, Shaughnessy, Daniel P., Roberto, Francisco F., Wolf, Yuri I., Koonin, Eugene V.
Publicado em 2013

Biotic and Environmental Drivers of Plant Microbiomes Across a Permafrost Thaw Gradient

Por Hough, Moira, McClure, Amelia, Bolduc, Benjamin, Dorrepaal, Ellen, Saleska, Scott, Klepac-Ceraj, Vanja, Rich, Virginia
Publicado no Front Microbiol (2020)

Healthy human gut phageome

Por Manrique, Pilar, Bolduc, Benjamin, Walk, Seth T., van der Oost, John, de Vos, Willem M., Young, Mark J.
Publicado no Proc Natl Acad Sci U S A (2016)

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

Por Trubl, Gareth, Roux, Simon, Solonenko, Natalie, Li, Yueh-Fen, Bolduc, Benjamin, Rodríguez-Ramos, Josué, Eloe-Fadrosh, Emiley A., Rich, Virginia I., Sullivan, Matthew B.
Publicado no PeerJ (2019)

Viral Ecogenomics of Arctic Cryopeg Brine and Sea Ice

Por Zhong, Zhi-Ping, Rapp, Josephine Z., Wainaina, James M., Solonenko, Natalie E., Maughan, Heather, Carpenter, Shelly D., Cooper, Zachary S., Jang, Ho Bin, Bolduc, Benjamin, Deming, Jody W., Sullivan, Matthew B.
Publicado no mSystems (2020)

Single-virus genomics reveals hidden cosmopolitan and abundant viruses

Por Martinez-Hernandez, Francisco, Fornas, Oscar, Lluesma Gomez, Monica, Bolduc, Benjamin, de la Cruz Peña, Maria Jose, Martínez, Joaquín Martínez, Anton, Josefa, Gasol, Josep M., Rosselli, Riccardo, Rodriguez-Valera, Francisco, Sullivan, Matthew B., Acinas, Silvia G., Martinez-Garcia, Manuel
Publicado no Nat Commun (2017)

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing

Por Trubl, Gareth, Jang, Ho Bin, Roux, Simon, Emerson, Joanne B., Solonenko, Natalie, Vik, Dean R., Solden, Lindsey, Ellenbogen, Jared, Runyon, Alexander T., Bolduc, Benjamin, Woodcroft, Ben J., Saleska, Scott R., Tyson, Gene W., Wrighton, Kelly C., Sullivan, Matthew B., Rich, Virginia I.
Publicado no mSystems (2018)

DRAM for distilling microbial metabolism to automate the curation of microbiome function

Por Shaffer, Michael, Borton, Mikayla A, McGivern, Bridget B, Zayed, Ahmed A, La Rosa, Sabina Leanti, Solden, Lindsey M, Liu, Pengfei, Narrowe, Adrienne B, Rodríguez-Ramos, Josué, Bolduc, Benjamin, Gazitúa, M Consuelo, Daly, Rebecca A, Smith, Garrett J, Vik, Dean R, Pope, Phil B, Sullivan, Matthew B, Roux, Simon, Wrighton, Kelly C
Publicado no Nucleic Acids Res (2020)

Host-linked soil viral ecology along a permafrost thaw gradient

Por Emerson, Joanne B., Roux, Simon, Brum, Jennifer R., Bolduc, Benjamin, Woodcroft, Ben J., Jang, Ho Bin, Singleton, Caitlin M., Solden, Lindsey M., Naas, Adrian E., Boyd, Joel A., Hodgkins, Suzanne B., Wilson, Rachel M., Trubl, Gareth, Li, Changsheng, Frolking, Steve, Pope, Phillip B., Wrighton, Kelly C., Crill, Patrick M., Chanton, Jeffrey P., Saleska, Scott R., Tyson, Gene W., Rich, Virginia I., Sullivan, Matthew B.
Publicado no Nat Microbiol (2018)