IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

Por Hadjithomas, Michalis, Chen, I-Min A., Chu, Ken, Huang, Jinghua, Ratner, Anna, Palaniappan, Krishna, Andersen, Evan, Markowitz, Victor, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado no Nucleic Acids Res (2017)

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

Por Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2008

The integrated microbial genomes system: an expanding comparative analysis resource

Por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2010

The integrated microbial genomes (IMG) system

Por Markowitz, Victor M., Korzeniewski, Frank, Palaniappan, Krishna, Szeto, Ernest, Werner, Greg, Padki, Anu, Zhao, Xueling, Dubchak, Inna, Hugenholtz, Philip, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia, Kyrpides, Nikos C.
Publicado em 2006

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

Por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Jacob, Biju, Ratner, Anna, Liolios, Konstantinos, Pagani, Ioanna, Huntemann, Marcel, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2012

IMG/M: a data management and analysis system for metagenomes

Por Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, Chen, I-Min A., Grechkin, Yuri, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Hugenholtz, Philip, Kyrpides, Nikos C.
Publicado em 2008

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

Por Chen, I-Min A., Markowitz, Victor M., Palaniappan, Krishna, Szeto, Ernest, Chu, Ken, Huang, Jinghua, Ratner, Anna, Pillay, Manoj, Hadjithomas, Michalis, Huntemann, Marcel, Mikhailova, Natalia, Ovchinnikova, Galina, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado no BMC Genomics (2016)

Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128

Por Reeve, Wayne, Ballard, Ross, Drew, Elizabeth, Tian, Rui, Bräu, Lambert, Goodwin, Lynne, Huntemann, Marcel, Han, James, Tatiparthi, Reddy, Chen, Amy, Mavrommatis, Konstantinos, Markowitz, Victor, Palaniappan, Krishna, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos
Publicado em 2014

IMG: the integrated microbial genomes database and comparative analysis system

Por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Huang, Jinghua, Williams, Peter, Huntemann, Marcel, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2012

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

Por Hadjithomas, Michalis, Chen, I-Min Amy, Chu, Ken, Ratner, Anna, Palaniappan, Krishna, Szeto, Ernest, Huang, Jinghua, Reddy, T. B. K., Cimermančič, Peter, Fischbach, Michael A., Ivanova, Natalia N., Markowitz, Victor M., Kyrpides, Nikos C., Pati, Amrita
Publicado no mBio (2015)

IMG/M: the integrated metagenome data management and comparative analysis system

Por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Pati, Amrita, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2012

IMG/M: integrated genome and metagenome comparative data analysis system

Por Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Palaniappan, Krishna, Szeto, Ernest, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Andersen, Evan, Huntemann, Marcel, Varghese, Neha, Hadjithomas, Michalis, Tennessen, Kristin, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado no Nucleic Acids Res (2017)

IMG 4 version of the integrated microbial genomes comparative analysis system

Por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Woyke, Tanja, Huntemann, Marcel, Anderson, Iain, Billis, Konstantinos, Varghese, Neha, Mavromatis, Konstantinos, Pati, Amrita, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2014

IMG/M 4 version of the integrated metagenome comparative analysis system

Por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Pagani, Ioanna, Tringe, Susannah, Huntemann, Marcel, Billis, Konstantinos, Varghese, Neha, Tennessen, Kristin, Mavromatis, Konstantinos, Pati, Amrita, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2014

Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert

Por Tak, Nisha, Gehlot, Hukam S, Kaushik, Muskan, Choudhary, Sunil, Tiwari, Ravi, Tian, Rui, Hill, Yvette, Bräu, Lambert, Goodwin, Lynne, Han, James, Liolios, Konstantinos, Huntemann, Marcel, Palaniappan, Krishna, Pati, Amrita, Mavromatis, Konstantinos, Ivanova, Natalia, Markowitz, Victor, Woyke, Tanja, Kyrpides, Nikos, Reeve, Wayne
Publicado em 2013

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India

Por Mukherjee, Supratim, Lapidus, Alla, Shapiro, Nicole, Cheng, Jan-Fang, Han, James, Reddy, TBK, Huntemann, Marcel, Ivanova, Natalia, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Spring, Stefan, Göker, Markus, Markowitz, Victor, Woyke, Tanja, Tindall, Brian J, Klenk, Hans-Peter, Kyrpides, Nikos C, Pati, Amrita
Publicado no Stand Genomic Sci (2015)

Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3)

Por Kallimanis, Aristeidis, LaButti, Kurt M., Lapidus, Alla, Clum, Alicia, Lykidis, Athanasios, Mavromatis, Kostantinos, Pagani, Ioanna, Liolios, Konstantinos, Ivanova, Natalia, Goodwin, Lynne, Pitluck, Sam, Chen, Amy, Palaniappan, Krishna, Markowitz, Victor, Bristow, Jim, Velentzas, Athanasios D., Perisynakis, Angelos, Ouzounis, Christos C, Kyrpides, Nikos C., Koukkou, Anna I., Drainas, Constantin
Publicado em 2011

The complete genome sequence of Clostridium indolis DSM 755(T)

Por Biddle, Amy S., Leschine, Susan, Huntemann, Marcel, Han, James, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Palaniappan, Krishna, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Schaumberg, Andrew, Pati, Amrita, Stamatis, Dimitrios, Reddy, Tatiparthi, Lobos, Elizabeth, Goodwin, Lynne, Nordberg, Henrik P., Cantor, Michael N., Hua, Susan X., Woyke, Tanja, Blanchard, Jeffrey L.
Publicado em 2014

Draft Genome Sequence of the Cellulolytic and Xylanolytic Thermophile Clostridium clariflavum Strain 4-2a

Por Rooney, Elise A., Rowe, Kenneth T., Guseva, Anna, Huntemann, Marcel, Han, James K., Chen, Amy, Kyrpides, Nikos C., Mavromatis, Konstantinos, Markowitz, Victor M., Palaniappan, Krishna, Ivanova, Natalia, Pati, Amrita, Liolios, Konstantinos, Nordberg, Henrik P., Cantor, Michael N., Hua, Susan X., Shapiro, Nicole, Woyke, Tanja, Lynd, Lee R., Izquierdo, Javier A.
Publicado no Genome Announc (2015)

Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters

Por Rice, Marlen C., Norton, Jeanette M., Stein, Lisa Y., Kozlowski, Jessica, Bollmann, Annette, Klotz, Martin G., Sayavedra-Soto, Luis, Shapiro, Nicole, Goodwin, Lynne A., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Varghese, Neha, Mikhailova, Natalia, Palaniappan, Krishna, Ivanova, Natalia, Mukherjee, Supratim, Reddy, T. B. K., Yee Ngan, Chew, Daum, Chris, Kyrpides, Nikos, Woyke, Tanja
Publicado no Genome Announc (2017)