Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung

nork Gawronski, Jeffrey D., Wong, Sandy M. S., Giannoukos, Georgia, Ward, Doyle V., Akerley, Brian J.
Argitaratua 2009

Quality scores and SNP detection in sequencing-by-synthesis systems

nork Brockman, William, Alvarez, Pablo, Young, Sarah, Garber, Manuel, Giannoukos, Georgia, Lee, William L., Russ, Carsten, Lander, Eric S., Nusbaum, Chad, Jaffe, David B.
Argitaratua 2008

Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes

nork Ciulla, Dawn, Giannoukos, Georgia, Earl, Ashlee, Feldgarden, Michael, Gevers, Dirk, Levin, Joshua, Livny, Jonathan, Ward, Doyle, Gnirke, Andreas, Nusbaum, Chad, Birren, Bruce
Argitaratua 2010

Solution Hybrid Selection with Ultra-long Oligonucleotides for Massively Parallel Targeted Sequencing

nork Gnirke, Andreas, Melnikov, Alexandre, Maguire, Jared, Rogov, Peter, LeProust, Emily M., Brockman, William, Fennell, Timothy, Giannoukos, Georgia, Fisher, Sheila, Russ, Carsten, Gabriel, Stacey, Jaffe, David B., Lander, Eric S., Nusbaum, Chad
Argitaratua 2009

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

nork Giannoukos, Georgia, Ciulla, Dawn M, Huang, Katherine, Haas, Brian J, Izard, Jacques, Levin, Joshua Z, Livny, Jonathan, Earl, Ashlee M, Gevers, Dirk, Ward, Doyle V, Nusbaum, Chad, Birren, Bruce W, Gnirke, Andreas
Argitaratua 2012

Relating the metatranscriptome and metagenome of the human gut

nork Franzosa, Eric A., Morgan, Xochitl C., Segata, Nicola, Waldron, Levi, Reyes, Joshua, Earl, Ashlee M., Giannoukos, Georgia, Boylan, Matthew R., Ciulla, Dawn, Gevers, Dirk, Izard, Jacques, Garrett, Wendy S., Chan, Andrew T., Huttenhower, Curtis
Argitaratua 2014

Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice

nork Donaldson, Gregory P., Chou, Wen-Chi, Manson, Abigail L., Rogov, Peter, Abeel, Thomas, Bochicchio, James, Ciulla, Dawn, Melnikov, Alexandre, Ernst, Peter B., Chu, Hiutung, Giannoukos, Georgia, Earl, Ashlee M., Mazmanian, Sarkis K.
Argitaratua izan da Nat Microbiol (2020)

UDiTaS™, a genome editing detection method for indels and genome rearrangements

nork Giannoukos, Georgia, Ciulla, Dawn M., Marco, Eugenio, Abdulkerim, Hayat S., Barrera, Luis A., Bothmer, Anne, Dhanapal, Vidya, Gloskowski, Sebastian W., Jayaram, Hariharan, Maeder, Morgan L., Skor, Maxwell N., Wang, Tongyao, Myer, Vic E., Wilson, Christopher J.
Argitaratua izan da BMC Genomics (2018)

Simultaneous generation of many RNA-seq libraries in a single reaction

nork Shishkin, Alexander A, Giannoukos, Georgia, Kucukural, Alper, Ciulla, Dawn, Busby, Michele, Surka, Christine, Chen, Jenny, Bhattacharyya, Roby P, Rudy, Robert F, Patel, Milesh M, Novod, Nathaniel, Hung, Deborah T, Gnirke, Andreas, Garber, Manuel, Guttman, Mitchell, Livny, Jonathan
Argitaratua izan da Nat Methods (2015)

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

nork Haas, Brian J., Gevers, Dirk, Earl, Ashlee M., Feldgarden, Mike, Ward, Doyle V., Giannoukos, Georgia, Ciulla, Dawn, Tabbaa, Diana, Highlander, Sarah K., Sodergren, Erica, Methé, Barbara, DeSantis, Todd Z., Petrosino, Joseph F., Knight, Rob, Birren, Bruce W.
Argitaratua 2011

Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease

nork Papa, Eliseo, Docktor, Michael, Smillie, Christopher, Weber, Sarah, Preheim, Sarah P., Gevers, Dirk, Giannoukos, Georgia, Ciulla, Dawn, Tabbaa, Diana, Ingram, Jay, Schauer, David B., Ward, Doyle V., Korzenik, Joshua R., Xavier, Ramnik J., Bousvaros, Athos, Alm, Eric J.
Argitaratua 2012

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

nork Henn, Matthew R., Sullivan, Matthew B., Stange-Thomann, Nicole, Osburne, Marcia S., Berlin, Aaron M., Kelly, Libusha, Yandava, Chandri, Kodira, Chinnappa, Zeng, Qiandong, Weiand, Michael, Sparrow, Todd, Saif, Sakina, Giannoukos, Georgia, Young, Sarah K., Nusbaum, Chad, Birren, Bruce W., Chisholm, Sallie W.
Argitaratua 2010

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

nork Mikkelsen, Tarjei S., Ku, Manching, Jaffe, David B., Issac, Biju, Lieberman, Erez, Giannoukos, Georgia, Alvarez, Pablo, Brockman, William, Kim, Tae-Kyung, Koche, Richard P., Lee, William, Mendenhall, Eric, O’Donovan, Aisling, Presser, Aviva, Russ, Carsten, Xie, Xiaohui, Meissner, Alexander, Wernig, Marius, Jaenisch, Rudolf, Nusbaum, Chad, Lander, Eric S., Bernstein, Bradley E.
Argitaratua 2007

A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454

nork Lennon, Niall J, Lintner, Robert E, Anderson, Scott, Alvarez, Pablo, Barry, Andrew, Brockman, William, Daza, Riza, Erlich, Rachel L, Giannoukos, Georgia, Green, Lisa, Hollinger, Andrew, Hoover, Cindi A, Jaffe, David B, Juhn, Frank, McCarthy, Danielle, Perrin, Danielle, Ponchner, Karen, Powers, Taryn L, Rizzolo, Kamran, Robbins, Dana, Ryan, Elizabeth, Russ, Carsten, Sparrow, Todd, Stalker, John, Steelman, Scott, Weiand, Michael, Zimmer, Andrew, Henn, Matthew R, Nusbaum, Chad, Nicol, Robert
Argitaratua 2010

A framework for human microbiome research

nork Methé, Barbara A., Nelson, Karen E., Pop, Mihai, Creasy, Heather H., Giglio, Michelle G., Huttenhower, Curtis, Gevers, Dirk, Petrosino, Joseph F., Abubucker, Sahar, Badger, Jonathan H., Chinwalla, Asif T., Earl, Ashlee M., FitzGerald, Michael G., Fulton, Robert S., Hallsworth-Pepin, Kymberlie, Lobos, Elizabeth A., Madupu, Ramana, Magrini, Vincent, Martin, John C., Mitreva, Makedonka, Muzny, Donna M., Sodergren, Erica J., Versalovic, James, Wollam, Aye M., Worley, Kim C., Wortman, Jennifer R., Young, Sarah K., Zeng, Qiandong, Aagaard, Kjersti M., Abolude, Olukemi O., Allen-Vercoe, Emma, Alm, Eric J., Alvarado, Lucia, Andersen, Gary L., Anderson, Scott, Appelbaum, Elizabeth, Arachchi, Harindra M., Armitage, Gary, Arze, Cesar A., Ayvaz, Tulin, Baker, Carl C., Begg, Lisa, Belachew, Tsegahiwot, Bhonagiri, Veena, Bihan, Monika, Blaser, Martin J., Bloom, Toby, Vivien Bonazzi, J., Brooks, Paul, Buck, Gregory A., Buhay, Christian J., Busam, Dana A., Campbell, Joseph L., Canon, Shane R., Cantarel, Brandi L., Chain, Patrick S., Chen, I-Min A., Chen, Lei, Chhibba, Shaila, Chu, Ken, Ciulla, Dawn M., Clemente, Jose C., Clifton, Sandra W., Conlan, Sean, Crabtree, Jonathan, Cutting, Mary A., Davidovics, Noam J., Davis, Catherine C., DeSantis, Todd Z., Deal, Carolyn, Delehaunty, Kimberley D., Dewhirst, Floyd E., Deych, Elena, Ding, Yan, Dooling, David J., Dugan, Shannon P., Dunne, Wm. Michael, Durkin, A. Scott, Edgar, Robert C., Erlich, Rachel L., Farmer, Candace N., Farrell, Ruth M., Faust, Karoline, Feldgarden, Michael, Felix, Victor M., Fisher, Sheila, Fodor, Anthony A., Forney, Larry, Foster, Leslie, Di Francesco, Valentina, Friedman, Jonathan, Friedrich, Dennis C., Fronick, Catrina C., Fulton, Lucinda L., Gao, Hongyu, Garcia, Nathalia, Giannoukos, Georgia, Giblin, Christina, Giovanni, Maria Y., Goldberg, Jonathan M., Goll, Johannes, Gonzalez, Antonio, Griggs, Allison, Gujja, Sharvari, Haas, Brian J., Hamilton, Holli A., Harris, Emily L., Hepburn, Theresa A., Herter, Brandi, Hoffmann, Diane E., Holder, Michael E., Howarth, Clinton, Huang, Katherine H., Huse, Susan M., Izard, Jacques, Jansson, Janet K., Jiang, Huaiyang, Jordan, Catherine, Joshi, Vandita, Katancik, James A., Keitel, Wendy A., Kelley, Scott T., Kells, Cristyn, Kinder-Haake, Susan, King, Nicholas B., Knight, Rob, Knights, Dan, Kong, Heidi H., Koren, Omry, Koren, Sergey, Kota, Karthik C., Kovar, Christie L., Kyrpides, Nikos C., La Rosa, Patricio S., Lee, Sandra L., Lemon, Katherine P., Lennon, Niall, Lewis, Cecil M., Lewis, Lora, Ley, Ruth E., Li, Kelvin, Liolios, Konstantinos, Liu, Bo, Liu, Yue, Lo, Chien-Chi, Lozupone, Catherine A., Lunsford, R. Dwayne, Madden, Tessa, Mahurkar, Anup A., Mannon, Peter J., Mardis, Elaine R., Markowitz, Victor M., Mavrommatis, Konstantinos, McCorrison, Jamison M., McDonald, Daniel, McEwen, Jean, McGuire, Amy L., McInnes, Pamela, Mehta, Teena, Mihindukulasuriya, Kathie A., Miller, Jason R., Minx, Patrick J., Newsham, Irene, Nusbaum, Chad, O’Laughlin, Michelle, Orvis, Joshua, Pagani, Ioanna, Palaniappan, Krishna, Patel, Shital M., Pearson, Matthew, Peterson, Jane, Podar, Mircea, Pohl, Craig, Pollard, Katherine S., Priest, Margaret E., Proctor, Lita M., Qin, Xiang, Raes, Jeroen, Ravel, Jacques, Reid, Jeffrey G., Rho, Mina, Rhodes, Rosamond, Riehle, Kevin P., Rivera, Maria C., Rodriguez-Mueller, Beltran, Rogers, Yu-Hui, Ross, Matthew C., Russ, Carsten, Sanka, Ravi K., Pamela Sankar, J., Sathirapongsasuti, Fah, Schloss, Jeffery A., Schloss, Patrick D., Schmidt, Thomas M., Scholz, Matthew, Schriml, Lynn, Schubert, Alyxandria M., Segata, Nicola, Segre, Julia A., Shannon, William D., Sharp, Richard R., Sharpton, Thomas J., Shenoy, Narmada, Sheth, Nihar U., Simone, Gina A., Singh, Indresh, Smillie, Chris S., Sobel, Jack D., Sommer, Daniel D., Spicer, Paul, Sutton, Granger G., Sykes, Sean M., Tabbaa, Diana G., Thiagarajan, Mathangi, Tomlinson, Chad M., Torralba, Manolito, Treangen, Todd J., Truty, Rebecca M., Vishnivetskaya, Tatiana A., Walker, Jason, Wang, Lu, Wang, Zhengyuan, Ward, Doyle V., Warren, Wesley, Watson, Mark A., Wellington, Christopher, Wetterstrand, Kris A., White, James R., Wilczek-Boney, Katarzyna, Wu, Yuan Qing, Wylie, Kristine M., Wylie, Todd, Yandava, Chandri, Ye, Liang, Ye, Yuzhen, Yooseph, Shibu, Youmans, Bonnie P., Zhang, Lan, Zhou, Yanjiao, Zhu, Yiming, Zoloth, Laurie, Zucker, Jeremy D., Birren, Bruce W., Gibbs, Richard A., Highlander, Sarah K., Weinstock, George M., Wilson, Richard K., White, Owen
Argitaratua 2012