Measure transcript integrity using RNA-seq data

Por Wang, Liguo, Nie, Jinfu, Sicotte, Hugues, Li, Ying, Eckel-Passow, Jeanette E., Dasari, Surendra, Vedell, Peter T., Barman, Poulami, Wang, Liewei, Weinshiboum, Richard, Jen, Jin, Huang, Haojie, Kohli, Manish, Kocher, Jean-Pierre A.
Publicado no BMC Bioinformatics (2016)

A Prospective Correlation of Tissue Histopathology With Nucleic Acid Yield in Metastatic Castration-Resistant Prostate Cancer Biopsy Specimens

Por Jimenez, Rafael E., Atwell, Thomas D., Sicotte, Hughes, Eckloff, Bruce, Wang, Liguo, Barman, Poulami, Sinnwell, Jason P., Eiken, Patrick W., McMenomy, Brendan P., Tan, Winston, Wang, Liewei, Carlson, Rachel E., Kohli, Manish
Publicado no Mayo Clin Proc Innov Qual Outcomes (2019)

Estrogens and their precursors in postmenopausal women with early breast cancer receiving anastrozole

Por Ingle, James N., Kalari, KR, Buzdar, Aman U., Robson, Mark E., Goetz, Matthew P., Desta, Zeruesenay, Barman, Poulami, Dudenkov, Tanda T., Northfelt, Donald W., Perez, Edith A., Flockhart, David A., Williard, Clark V., Wang, Liewei, Weinshilboum, Richard M.
Publicado no Steroids (2014)

Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell...

Por Niu, Nifang, Liu, Tongzheng, Cairns, Junmei, Ly, Reynold C., Tan, Xianglin, Deng, Min, Fridley, Brooke L., Kalari, Krishna R., Abo, Ryan P., Jenkins, Gregory, Batzler, Anthony, Carlson, Erin E., Barman, Poulami, Moran, Sebastian, Heyn, Holger, Esteller, Manel, Wang, Liewei
Publicado no Hum Mol Genet (2016)

Deep sequencing across germline genome-wide association study signals relating to breast cancer events in women receiving aromatase inhibitors for adjuvant therapy of early breast...

Por Ingle, James N., Kalari, Krishna R., Momozawa, Yukihide, Kubo, Michiaki, Furukawa, Yoichi, Shepherd, Lois E., Ellis, Matthew J., Goss, Paul E., Barman, Poulami, Carlson, Erin E., Sinnwell, Jason P., Tang, Xiaojia, Goetz, Matthew P., Chen, Bingshu E., Cairns, Junmei, Weinshilboum, Richard M., Wang, Liewei
Publicado no Pharmacogenet Genomics (2019)

Determining the frequency of pathogenic germline variants from exome sequencing in patients with castrate-resistant prostate cancer

Por Hart, Steven N, Ellingson, Marissa S, Schahl, Kim, Vedell, Peter T, Carlson, Rachel E, Sinnwell, Jason P, Barman, Poulami, Sicotte, Hugues, Eckel-Passow, Jeanette E, Wang, Liguo, Kalari, Krishna R, Qin, Rui, Kruisselbrink, Teresa M, Jimenez, Rafael E, Bryce, Alan H, Tan, Winston, Weinshilboum, Richard, Wang, Liewei, Kohli, Manish
Publicado no BMJ Open (2016)

Genetic polymorphisms in the long noncoding RNA MIR2052HG offer a pharmacogenomic basis for the response of breast cancer patients to aromatase inhibitor therapy

Por Ingle, James N., Xie, Fang, Ellis, Matthew J., Goss, Paul E., Shepherd, Lois E., Chapman, Judith-Anne W., Chen, Bingshu E., Kubo, Michiaki, Furukawa, Yoichi, Momozawa, Yukihide, Stearns, Vered, Pritchard, Kathleen I., Barman, Poulami, Carlson, Erin E., Goetz, Matthew P., Weinshilboum, Richard M., Kalari, Krishna R., Wang, Liewei
Publicado no Cancer Res (2016)

Germline genome-wide association studies in women receiving neoadjuvant chemotherapy with or without bevacizumab

Por Ingle, James N., Kalari, Krishna R., Wickerham, D. Lawrence, von Minckwitz, Gunter, Fasching, Peter A., Furukawa, Yoichi, Mushiroda, Taisei, Goetz, Matthew P., Barman, Poulami, Carlson, Erin E., Rastogi, Priya, Costantino, Joseph P., Cairns, Junmei, Paik, Soonmyung, Bear, Harry D., Kubo, Michiaki, Wang, Liewei, Wolmark, Norman, Weinshilboum, Richard M.
Publicado no Pharmacogenet Genomics (2018)

SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway

Por Dudenkov, Tanda M., Ingle, James N., Buzdar, Aman U., Robson, Mark E., Kubo, Michiaki, Ibrahim-zada, Irada, Batzler, Anthony, Jenkins, Gregory D., Pietrzak, Tracy L., Carlson, Erin E., Barman, Poulami, Goetz, Matthew P., Northfelt, Donald W., Moreno-Aspita, Alvaro, Williard, Clark V., Kalari, Krishna R., Nakamura, Yusuke, Wang, Liewei, Weinshilboum, Richard M.
Publicado no Breast Cancer Res Treat (2017)

Mutational Landscapes of Sequential Prostate Metastases and Matched Patient Derived Xenografts during Enzalutamide Therapy

Por Kohli, Manish, Wang, Liguo, Xie, Fang, Sicotte, Hugues, Yin, Ping, Dehm, Scott M., Hart, Steven N., Vedell, Peter T., Barman, Poulami, Qin, Rui, Mahoney, Douglas W., Carlson, Rachel E., Eckel-Passow, Jeanette E., Atwell, Thomas D., Eiken, Patrick W., McMenomy, Brendan P., Wieben, Eric D., Jha, Gautam, Jimenez, Rafael E., Weinshilboum, Richard, Wang, Liewei
Publicado no PLoS One (2015)

Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome‐Wide Association Study: Functional Epistatic Interaction Between SLC38A7 and ALPPL2

Por Dudenkov, Tanda M., Liu, Duan, Cairns, Junmei, Devarajan, Sandhya, Zhuang, Yongxian, Ingle, James N., Buzdar, Aman U., Robson, Mark E., Kubo, Michiaki, Batzler, Anthony, Barman, Poulami, Jenkins, Gregory D., Carlson, Erin E., Goetz, Matthew P., Northfelt, Donald W., Moreno‐Aspitia, Alvaro, Desta, Zeruesenay, Reid, Joel M., Kalari, Krishna R., Wang, Liewei, Weinshilboum, Richard M.
Publicado no Clin Pharmacol Ther (2019)

An Integrated Model of the Transcriptome of HER2-Positive Breast Cancer

Por Kalari, Krishna R., Necela, Brian M., Tang, Xiaojia, Thompson, Kevin J., Lau, Melissa, Eckel-Passow, Jeanette E., Kachergus, Jennifer M., Anderson, S. Keith, Sun, Zhifu, Baheti, Saurabh, Carr, Jennifer M., Baker, Tiffany R., Barman, Poulami, Radisky, Derek C., Joseph, Richard W., McLaughlin, Sarah A., Chai, High-seng, Camille, Stephan, Rossell, David, Asmann, Yan W., Thompson, E. Aubrey, Perez, Edith A.
Publicado em 2013

Anastrozole has an association between degree of estrogen suppression and outcomes in early breast cancer and is a ligand for estrogen receptor α

Por Ingle, James N., Cairns, Junmei, Suman, Vera J., Shepherd, Lois E., Fasching, Peter A., Hoskin, Tanya L., Singh, Ravinder J., Desta, Zeruesenay, Kalari, Krishna R., Ellis, Matthew J., Goss, Paul E., Chen, Bingshu E., Volz, Bernhard, Barman, Poulami, Carlson, Erin E., Haddad, Tufia, Goetz, Matthew P., Goodnature, Barbara, Cuellar, Matthew E., Walters, Michael A., Correia, Cristina, Kaufmann, Scott H., Weinshilboum, Richard M., Wang, Liewei
Publicado no Clin Cancer Res (2020)

Exome sequencing reveals frequent deleterious germline variants in cancer susceptibility genes in women with invasive breast cancer undergoing neoadjuvant chemotherapy

Por Ellingson, Marissa S., Hart, Steven N., Kalari, Krishna R., Suman, Vera, Schahl, Kimberly A., Dockter, Travis J., Felten, Sara J., Sinnwell, Jason P., Thompson, Kevin J., Tang, Xiaojia, Vedell, Peter T., Barman, Poulami, Sicotte, Hugues, Eckel-Passow, Jeanette E., Northfelt, Donald W., Gray, Richard J., McLaughlin, Sarah A., Moreno-Aspitia, Alvaro, Ingle, James N., Moyer, Ann M., Visscher, Daniel W., Jones, Katie, Conners, Amy, McDonough, Michelle, Wieben, Eric D., Wang, Liewei, Weinshilboum, Richard, Boughey, Judy C., Goetz, Matthew P.
Publicado no Breast Cancer Res Treat (2015)

Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder

Por Amare, Azmeraw T., Schubert, Klaus Oliver, Tekola-Ayele, Fasil, Hsu, Yi-Hsiang, Sangkuhl, Katrin, Jenkins, Gregory, Whaley, Ryan M., Barman, Poulami, Batzler, Anthony, Altman, Russ B., Arolt, Volker, Brockmöller, Jürgen, Chen, Chia-Hui, Domschke, Katharina, Hall-Flavin, Daniel K., Hong, Chen-Jee, Illi, Ari, Ji, Yuan, Kampman, Olli, Kinoshita, Toshihiko, Leinonen, Esa, Liou, Ying-Jay, Mushiroda, Taisei, Nonen, Shinpei, Skime, Michelle K., Wang, Liewei, Kato, Masaki, Liu, Yu-Li, Praphanphoj, Verayuth, Stingl, Julia C., Bobo, William V., Tsai, Shih-Jen, Kubo, Michiaki, Klein, Teri E., Weinshilboum, Richard M., Biernacka, Joanna M., Baune, Bernhard T.
Publicado no Front Psychiatry (2018)

The influence of obesity-related factors in the etiology of renal cell carcinoma—A mendelian randomization study

Por Johansson, Mattias, Carreras-Torres, Robert, Scelo, Ghislaine, Purdue, Mark P., Mariosa, Daniela, Muller, David C., Timpson, Nicolas J., Haycock, Philip C., Brown, Kevin M., Wang, Zhaoming, Ye, Yuanqing, Hofmann, Jonathan N., Foll, Matthieu, Gaborieau, Valerie, Machiela, Mitchell J., Colli, Leandro M., Li, Peng, Garnier, Jean-Guillaume, Blanche, Helene, Boland, Anne, Burdette, Laurie, Prokhortchouk, Egor, Skryabin, Konstantin G., Yeager, Meredith, Radojevic-Skodric, Sanja, Ognjanovic, Simona, Foretova, Lenka, Holcatova, Ivana, Janout, Vladimir, Mates, Dana, Mukeriya, Anush, Rascu, Stefan, Zaridze, David, Bencko, Vladimir, Cybulski, Cezary, Fabianova, Eleonora, Jinga, Viorel, Lissowska, Jolanta, Lubinski, Jan, Navratilova, Marie, Rudnai, Peter, Benhamou, Simone, Cancel-Tassin, Geraldine, Cussenot, Olivier, Weiderpass, Elisabete, Ljungberg, Börje, Tumkur Sitaram, Raviprakash, Häggström, Christel, Bruinsma, Fiona, Jordan, Susan J., Severi, Gianluca, Winship, Ingrid, Hveem, Kristian, Vatten, Lars J., Fletcher, Tony, Larsson, Susanna C., Wolk, Alicja, Banks, Rosamonde E., Selby, Peter J., Easton, Douglas F., Andreotti, Gabriella, Beane Freeman, Laura E., Koutros, Stella, Männistö, Satu, Weinstein, Stephanie, Clark, Peter E., Edwards, Todd L., Lipworth, Loren, Gapstur, Susan M., Stevens, Victoria L., Carol, Hallie, Freedman, Matthew L., Pomerantz, Mark M., Cho, Eunyoung, Wilson, Kathryn M., Gaziano, J. Michael, Sesso, Howard D., Freedman, Neal D., Parker, Alexander S., Eckel-Passow, Jeanette E., Huang, Wen-Yi, Kahnoski, Richard J., Lane, Brian R., Noyes, Sabrina L., Petillo, David, Teh, Bin Tean, Peters, Ulrike, White, Emily, Anderson, Garnet L., Johnson, Lisa, Luo, Juhua, Buring, Julie, Lee, I-Min, Chow, Wong-Ho, Moore, Lee E., Eisen, Timothy, Henrion, Marc, Larkin, James, Barman, Poulami, Leibovich, Bradley C., Choueiri, Toni K., Lathrop, G. Mark, Deleuze, Jean-Francois, Gunter, Marc, McKay, James D., Wu, Xifeng, Houlston, Richard S., Chanock, Stephen J., Relton, Caroline, Richards, J. Brent, Martin, Richard M., Davey Smith, George, Brennan, Paul
Publicado no PLoS Med (2019)

Genome-wide association study identifies multiple risk loci for renal cell carcinoma

Por Scelo, Ghislaine, Purdue, Mark P., Brown, Kevin M., Johansson, Mattias, Wang, Zhaoming, Eckel-Passow, Jeanette E., Ye, Yuanqing, Hofmann, Jonathan N., Choi, Jiyeon, Foll, Matthieu, Gaborieau, Valerie, Machiela, Mitchell J., Colli, Leandro M., Li, Peng, Sampson, Joshua N., Abedi-Ardekani, Behnoush, Besse, Celine, Blanche, Helene, Boland, Anne, Burdette, Laurie, Chabrier, Amelie, Durand, Geoffroy, Le Calvez-Kelm, Florence, Prokhortchouk, Egor, Robinot, Nivonirina, Skryabin, Konstantin G., Wozniak, Magdalena B., Yeager, Meredith, Basta-Jovanovic, Gordana, Dzamic, Zoran, Foretova, Lenka, Holcatova, Ivana, Janout, Vladimir, Mates, Dana, Mukeriya, Anush, Rascu, Stefan, Zaridze, David, Bencko, Vladimir, Cybulski, Cezary, Fabianova, Eleonora, Jinga, Viorel, Lissowska, Jolanta, Lubinski, Jan, Navratilova, Marie, Rudnai, Peter, Szeszenia-Dabrowska, Neonila, Benhamou, Simone, Cancel-Tassin, Geraldine, Cussenot, Olivier, Baglietto, Laura, Boeing, Heiner, Khaw, Kay-Tee, Weiderpass, Elisabete, Ljungberg, Borje, Sitaram, Raviprakash T., Bruinsma, Fiona, Jordan, Susan J., Severi, Gianluca, Winship, Ingrid, Hveem, Kristian, Vatten, Lars J., Fletcher, Tony, Koppova, Kvetoslava, Larsson, Susanna C., Wolk, Alicja, Banks, Rosamonde E., Selby, Peter J., Easton, Douglas F., Pharoah, Paul, Andreotti, Gabriella, Freeman, Laura E. Beane, Koutros, Stella, Albanes, Demetrius, Männistö, Satu, Weinstein, Stephanie, Clark, Peter E., Edwards, Todd L., Lipworth, Loren, Gapstur, Susan M., Stevens, Victoria L., Carol, Hallie, Freedman, Matthew L., Pomerantz, Mark M., Cho, Eunyoung, Kraft, Peter, Preston, Mark A., Wilson, Kathryn M., Michael Gaziano, J., Sesso, Howard D., Black, Amanda, Freedman, Neal D., Huang, Wen-Yi, Anema, John G., Kahnoski, Richard J., Lane, Brian R., Noyes, Sabrina L., Petillo, David, Teh, Bin Tean, Peters, Ulrike, White, Emily, Anderson, Garnet L., Johnson, Lisa, Luo, Juhua, Buring, Julie, Lee, I-Min, Chow, Wong-Ho, Moore, Lee E., Wood, Christopher, Eisen, Timothy, Henrion, Marc, Larkin, James, Barman, Poulami, Leibovich, Bradley C., Choueiri, Toni K., Mark Lathrop, G., Rothman, Nathaniel, Deleuze, Jean-Francois, McKay, James D., Parker, Alexander S., Wu, Xifeng, Houlston, Richard S., Brennan, Paul, Chanock, Stephen J.
Publicado no Nat Commun (2017)