Whole Exome Sequencing Among 26 Patients With Indeterminate Acute Liver Failure: Response to Letter to the Editor

Por Rakela, Jorge, Dehankar, Mrunal K., Baheti, Saurabh
Publicado no Clin Transl Gastroenterol (2020)

From Days to Hours: Reporting Clinically Actionable Variants from Whole Genome Sequencing

Por Middha, Sumit, Baheti, Saurabh, Hart, Steven N., Kocher, Jean-Pierre A.
Publicado em 2014

Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

Por Baheti, Saurabh, Kanwar, Rahul, Goelzenleuchter, Meike, Kocher, Jean-Pierre A., Beutler, Andreas S., Sun, Zhifu
Publicado no BMC Genomics (2016)

Whole Exome Sequencing Among 26 Patients With Indeterminate Acute Liver Failure: A Pilot Study

Por Rakela, Jorge, Rule, Jody, Ganger, Daniel, Lau, Julie, Cunningham, Julie, Dehankar, Mrunal, Baheti, Saurabh, Lee, William M.
Publicado no Clin Transl Gastroenterol (2019)

SoftSearch: Integration of Multiple Sequence Features to Identify Breakpoints of Structural Variations

Por Hart, Steven N., Sarangi, Vivekananda, Moore, Raymond, Baheti, Saurabh, Bhavsar, Jaysheel D., Couch, Fergus J., Kocher, Jean-Pierre A.
Publicado em 2013

Aberrant signature methylome by DNMT1 hot spot mutation in hereditary sensory and autonomic neuropathy 1E

Por Sun, Zhifu, Wu, Yanhong, Ordog, Tamas, Baheti, Saurabh, Nie, Jinfu, Duan, Xiaohui, Hojo, Kaori, Kocher, Jean-Pierre, Dyck, Peter J, Klein, Christopher J
Publicado em 2014

Identification of Differentially Methylated Regions in New Genes Associated with Knee Osteoarthritis

Por Bonin, Carolina A., Lewallen, Eric A., Baheti, Saurabh, Bradley, Elizabeth W., Stuart, Michael J., Berry, Daniel J., van Wijnen, Andre J., Westendorf, Jennifer J.
Publicado no Gene (2015)

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing

Por Sun, Zhifu, Baheti, Saurabh, Middha, Sumit, Kanwar, Rahul, Zhang, Yuji, Li, Xing, Beutler, Andreas S., Klee, Eric, Asmann, Yan W., Thompson, E. Aubrey, Kocher, Jean-Pierre A.
Publicado em 2012

Perinatal Nutritional Reprogramming of the Epigenome Promotes Subsequent Development of Nonalcoholic Steatohepatitis

Por Gutierrez Sanchez, Luz Helena, Tomita, Kyoko, Guo, Qianqian, Furuta, Kunimaro, Alhuwaish, Husam, Hirsova, Petra, Baheti, Saurabh, Alver, Bonnie, Hlady, Ryan, Robertson, Keith D., Ibrahim, Samar H.
Publicado no Hepatol Commun (2018)

Comprehensive Assessment of Genetic Variants Within TCF4 in Fuchs' Endothelial Corneal Dystrophy

Por Wieben, Eric D., Aleff, Ross A., Eckloff, Bruce W., Atkinson, Elizabeth J., Baheti, Saurabh, Middha, Sumit, Brown, William L., Patel, Sanjay V., Kocher, Jean-Pierre A., Baratz, Keith H.
Publicado em 2014

Comprehensively Evaluating cis-Regulatory Variation in the Human Prostate Transcriptome by Using Gene-Level Allele-Specific Expression

Por Larson, Nicholas B., McDonnell, Shannon, French, Amy J., Fogarty, Zach, Cheville, John, Middha, Sumit, Riska, Shaun, Baheti, Saurabh, Nair, Asha A., Wang, Liang, Schaid, Daniel J., Thibodeau, Stephen N.
Publicado no Am J Hum Genet (2015)

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

Por Baheti, Saurabh, Tang, Xiaojia, O’Brien, Daniel R., Chia, Nicholas, Roberts, Lewis R., Nelson, Heidi, Boughey, Judy C., Wang, Liewei, Goetz, Matthew P., Kocher, Jean-Pierre A., Kalari, Krishna R.
Publicado no BMC Bioinformatics (2018)

Target-enrichment sequencing and copy number evaluation in inherited polyneuropathy

Por Wang, Wei, Wang, Chen, Dawson, D. Brian, Thorland, Erik C., Lundquist, Patrick A., Eckloff, Bruce W., Wu, Yanhong, Baheti, Saurabh, Evans, Jared M., Scherer, Steven S., Dyck, Peter J., Klein, Christopher J.
Publicado no Neurology (2016)

DNA methylation patterns in human iPSC-derived sensory neuronal differentiation

Por Ankam, Soneela, Rovini, Amandine, Baheti, Saurabh, Hrstka, Ron, Wu, Yanhong, Schmidt, Kiley, Wang, Hailong, Madigan, Nicolas, Koenig, Lena-Sophie, Stelzig, Kimberly, Resch, Zachary, Klein, Christopher J., Sun, Zhifu, Staff, Nathan P.
Publicado no Epigenetics (2019)

RVboost: RNA-seq variants prioritization using a boosting method

Por Wang, Chen, Davila, Jaime I., Baheti, Saurabh, Bhagwate, Aditya V., Wang, Xue, Kocher, Jean-Pierre A., Slager, Susan L., Feldman, Andrew L., Novak, Anne J., Cerhan, James R., Thompson, E. Aubrey, Asmann, Yan W.
Publicado no Bioinformatics (2014)

New DNA Methylation Markers for Pancreatic Cancer: Discovery, Tissue Validation, and Pilot Testing in Pancreatic Juice

Por Kisiel, John B., Raimondo, Massimo, Taylor, William R., Yab, Tracy C., Mahoney, Douglas W., Sun, Zhifu, Middha, Sumit, Baheti, Saurabh, Zou, Hongzhi, Smyrk, Thomas C., Boardman, Lisa A., Petersen, Gloria M., Ahlquist, David A.
Publicado no Clin Cancer Res (2015)

Network-directed cis-mediator analysis of normal prostate tissue expression profiles reveals downstream regulatory associations of prostate cancer susceptibility loci

Por Larson, Nicholas B., McDonnell, Shannon K., Fogarty, Zach, Larson, Melissa C., Cheville, John, Riska, Shaun, Baheti, Saurabh, Weber, Alexandra M., Nair, Asha A., Wang, Liang, O’Brien, Daniel, Davila, Jaime, Schaid, Daniel J., Thibodeau, Stephen N.
Publicado no Oncotarget (2017)

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data

Por Asmann, Yan W., Middha, Sumit, Hossain, Asif, Baheti, Saurabh, Li, Ying, Chai, High-Seng, Sun, Zhifu, Duffy, Patrick H., Hadad, Ahmed A., Nair, Asha, Liu, Xiaoyu, Zhang, Yuji, Klee, Eric W., Kalari, Krishna R., Kocher, Jean-Pierre A.
Publicado em 2012

The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data

Por Tang, Xiaojia, Baheti, Saurabh, Shameer, Khader, Thompson, Kevin J., Wills, Quin, Niu, Nifang, Holcomb, Ilona N., Boutet, Stephane C., Ramakrishnan, Ramesh, Kachergus, Jennifer M., Kocher, Jean-Pierre A., Weinshilboum, Richard M., Wang, Liewei, Thompson, E. Aubrey, Kalari, Krishna R.
Publicado no Nucleic Acids Res (2014)

Recommendations for performance optimizations when using GATK3.8 and GATK4

Por Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Publicado no BMC Bioinformatics (2019)