Recommendations for performance optimizations when using GATK3.8 and GATK4

BACKGROUND: Use of the Genome Analysis Toolkit (GATK) continues to be the standard practice in genomic variant calling in both research and the clinic. Recently the toolkit has been rapidly evolving. Significant computational performance improvements have been introduced in GATK3.8 through collabora...

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Detalhes bibliográficos
Publicado no:BMC Bioinformatics
Main Authors: Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2019
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Software
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6842142/
https://ncbi.nlm.nih.gov/pubmed/31703611
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-019-3169-7
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