qPMS7: A Fast Algorithm for Finding (ℓ, d)-Motifs in DNA and Protein Sequences

Por Dinh, Hieu, Rajasekaran, Sanguthevar, Davila, Jaime
Publicado em 2012

Extensive Rearrangement of the Arabidopsis Mitochondrial Genome Elicits Cellular Conditions for Thermotolerance(1)([W])([OA])

Por Shedge, Vikas, Davila, Jaime, Arrieta-Montiel, Maria P., Mohammed, Saleem, Mackenzie, Sally A.
Publicado em 2010

Diversity of the Arabidopsis Mitochondrial Genome Occurs via Nuclear-Controlled Recombination Activity

Por Arrieta-Montiel, Maria P., Shedge, Vikas, Davila, Jaime, Christensen, Alan C., Mackenzie, Sally A.
Publicado em 2009

Murine Leukemia Virus Uses NXF1 for Nuclear Export of Spliced and Unspliced Viral Transcripts

Por Sakuma, Toshie, Davila, Jaime I., Malcolm, Jessica A., Kocher, Jean-Pierre A., Tonne, Jason M., Ikeda, Yasuhiro
Publicado em 2014

Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis

Por Davila, Jaime I, Arrieta-Montiel, Maria P, Wamboldt, Yashitola, Cao, Jun, Hagmann, Joerg, Shedge, Vikas, Xu, Ying-Zhi, Weigel, Detlef, Mackenzie, Sally A
Publicado em 2011

IL-33 Facilitates Oncogene Induced Cholangiocarcinoma in Mice by an IL-6 Sensitive Mechanism

Por Yamada, Daisaku, Rizvi, Sumera, Razumilava, Nataliya, Bronk, Steven F., Davila, Jaime I., Champion, Mia D., Borad, Mitesh J., Bezerra, Jorge A., Chen, Xin, Gores, Gregory J.
Publicado no Hepatology (2015)

Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes

Por Tuteja, Reetu, Saxena, Rachit K., Davila, Jaime, Shah, Trushar, Chen, Wenbin, Xiao, Yong-Li, Fan, Guangyi, Saxena, K. B., Alverson, Andrew J., Spillane, Charles, Town, Christopher, Varshney, Rajeev K.
Publicado em 2013

RNA Toxicity and Missplicing in the Common Eye Disease Fuchs Endothelial Corneal Dystrophy

Por Du, Jintang, Aleff, Ross A., Soragni, Elisabetta, Kalari, Krishna, Nie, Jinfu, Tang, Xiaojia, Davila, Jaime, Kocher, Jean-Pierre, Patel, Sanjay V., Gottesfeld, Joel M., Baratz, Keith H., Wieben, Eric D.
Publicado no J Biol Chem (2015)

RVboost: RNA-seq variants prioritization using a boosting method

Por Wang, Chen, Davila, Jaime I., Baheti, Saurabh, Bhagwate, Aditya V., Wang, Xue, Kocher, Jean-Pierre A., Slager, Susan L., Feldman, Andrew L., Novak, Anne J., Cerhan, James R., Thompson, E. Aubrey, Asmann, Yan W.
Publicado no Bioinformatics (2014)

Development and Characterization of Human Induced Pluripotent Stem Cell-Derived Cholangiocytes

Por De Assuncao, Thiago M., Sun, Yan, Jalan-Sakrikar, Nidhi, Drinane, Mary, Huang, Bing Q., Li, Ying, Davila, Jaime I., Wang, Ruisi, O’Hara, Steven P., Lomberk, Gwen A., Urrutia, Raul A., Ikeda, Yasuhiro, Huebert, Robert C.
Publicado no Lab Invest (2015)

MutS HOMOLOG1 Is a Nucleoid Protein That Alters Mitochondrial and Plastid Properties and Plant Response to High Light([W])([OA])

Por Xu, Ying-Zhi, Arrieta-Montiel, Maria P., Virdi, Kamaldeep S., de Paula, Wilson B.M., Widhalm, Joshua R., Basset, Gilles J., Davila, Jaime I., Elthon, Thomas E., Elowsky, Christian G., Sato, Shirley J., Clemente, Thomas E., Mackenzie, Sally A.
Publicado em 2011

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing

Por Kalari, Krishna R, Nair, Asha A, Bhavsar, Jaysheel D, O’Brien, Daniel R, Davila, Jaime I, Bockol, Matthew A, Nie, Jinfu, Tang, Xiaojia, Baheti, Saurabh, Doughty, Jay B, Middha, Sumit, Sicotte, Hugues, Thompson, Aubrey E, Asmann, Yan W, Kocher, Jean-Pierre A
Publicado no BMC Bioinformatics (2014)

Impact of RNA degradation on fusion detection by RNA-seq

Por Davila, Jaime I., Fadra, Numrah M., Wang, Xiaoke, McDonald, Amber M., Nair, Asha A., Crusan, Barbara, R., Wu, Xianglin, Blommel, Joseph H., Jen, Jin, Rumilla, Kandelaria M., Jenkins, Robert B., Aypar, Umut, Klee, Eric W., Kipp, Benjamin R., Halling, Kevin C.
Publicado no BMC Genomics (2016)

Comprehensive Genomic Profiling of a Rare Thyroid Follicular Dendritic Cell Sarcoma

Por Davila, Jaime I., Starr, Jason S., Attia, Steven, Wang, Chen, Knudson, Ryan A., Necela, Brian M., Sarangi, Vivekananda, Sun, Zhifu, Ren, Yingxue, Casler, John D., Menke, David M., Oliver, Gavin R., Joseph, Richard W., Copland, John A., Parker, Alexander S., Kocher, Jean-Pierre A., Thompson, E. Aubrey, Smallridge, Robert C., Asmann, Yan W.
Publicado no Rare Tumors (2017)

Integrated mate-pair and RNA sequencing identifies novel, targetable gene fusions in peripheral T-cell lymphoma

Por Boddicker, Rebecca L., Razidlo, Gina L., Dasari, Surendra, Zeng, Yu, Hu, Guangzhen, Knudson, Ryan A., Greipp, Patricia T., Davila, Jaime I., Johnson, Sarah H., Porcher, Julie C., Smadbeck, James B., Eckloff, Bruce W., Billadeau, Daniel D., Kurtin, Paul J., McNiven, Mark A., Link, Brian K., Ansell, Stephen M., Cerhan, James R., Asmann, Yan W., Vasmatzis, George, Feldman, Andrew L.
Publicado no Blood (2016)

TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer

Por Chien, Jeremy, Sicotte, Hugues, Fan, Jian-Bing, Humphray, Sean, Cunningham, Julie M., Kalli, Kimberly R., Oberg, Ann L., Hart, Steven N., Li, Ying, Davila, Jaime I., Baheti, Saurabh, Wang, Chen, Dietmann, Sabine, Atkinson, Elizabeth J., Asmann, Yan W., Bell, Debra A., Ota, Takayo, Tarabishy, Yaman, Kuang, Rui, Bibikova, Marina, Cheetham, R. Keira, Grocock, Russell J., Swisher, Elizabeth M., Peden, John, Bentley, David, Kocher, Jean-Pierre A., Kaufmann, Scott H., Hartmann, Lynn C., Shridhar, Viji, Goode, Ellen L.
Publicado no Nucleic Acids Res (2015)

Inherited Mutations in 17 Breast Cancer Susceptibility Genes Among a Large Triple-Negative Breast Cancer Cohort Unselected for Family History of Breast Cancer

Por Couch, Fergus J., Hart, Steven N., Sharma, Priyanka, Toland, Amanda Ewart, Wang, Xianshu, Miron, Penelope, Olson, Janet E., Godwin, Andrew K., Pankratz, V. Shane, Olswold, Curtis, Slettedahl, Seth, Hallberg, Emily, Guidugli, Lucia, Davila, Jaime I., Beckmann, Matthias W., Janni, Wolfgang, Rack, Brigitte, Ekici, Arif B., Slamon, Dennis J., Konstantopoulou, Irene, Fostira, Florentia, Vratimos, Athanassios, Fountzilas, George, Pelttari, Liisa M., Tapper, William J., Durcan, Lorraine, Cross, Simon S., Pilarski, Robert, Shapiro, Charles L., Klemp, Jennifer, Yao, Song, Garber, Judy, Cox, Angela, Brauch, Hiltrud, Ambrosone, Christine, Nevanlinna, Heli, Yannoukakos, Drakoulis, Slager, Susan L., Vachon, Celine M., Eccles, Diana M., Fasching, Peter A.
Publicado no J Clin Oncol (2015)