PVAAS: identify variants associated with aberrant splicing from RNA-seq

Por Wang, Liguo, Nie, Jinfu J., Kocher, Jean-Pierre A.
Publicado no Bioinformatics (2015)

The impact of pharmacokinetic gene profiles across human cancers

Por Zimmermann, Michael T., Therneau, Terry M., Kocher, Jean-Pierre A.
Publicado no BMC Cancer (2018)

Correction to: the impact of pharmacokinetic gene profiles across human cancers

Por Zimmermann, Michael T., Therneau, Terry M., Kocher, Jean-Pierre A.
Publicado no BMC Cancer (2018)

Genome-Wide Analysis of Loss of Heterozygosity in Breast Infiltrating Ductal Carcinoma Distant Normal Tissue Highlights Arm Specific Enrichment and Expansion across Tumor Stages

Por Ruan, Xiaoyang, Liu, Hongfang, Boardman, Lisa, Kocher, Jean-Pierre A.
Publicado em 2014

Indel sensitive and comprehensive variant/mutation detection from RNA sequencing data for precision medicine

Por Prodduturi, Naresh, Bhagwate, Aditya, Kocher, Jean-Pierre A., Sun, Zhifu
Publicado no BMC Med Genomics (2018)

From Days to Hours: Reporting Clinically Actionable Variants from Whole Genome Sequencing

Por Middha, Sumit, Baheti, Saurabh, Hart, Steven N., Kocher, Jean-Pierre A.
Publicado em 2014

Drug side effect extraction from clinical narratives of psychiatry and psychology patients

Por Sohn, Sunghwan, Kocher, Jean-Pierre A, Chute, Christopher G, Savova, Guergana K
Publicado em 2011

glmgraph: an R package for variable selection and predictive modeling of structured genomic data

Por Chen, Li, Liu, Han, Kocher, Jean-Pierre A., Li, Hongzhe, Chen, Jun
Publicado no Bioinformatics (2015)

Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations

Por Sun, Zhifu, Bhagwate, Aditya, Prodduturi, Naresh, Yang, Ping, Kocher, Jean-Pierre A
Publicado no Brief Bioinform (2017)

Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays

Por Chai, High Seng, Therneau, Terry M, Bailey, Kent R, Kocher, Jean-Pierre A
Publicado em 2010

Mass Homozygotes Accumulation in the NCI-60 Cancer Cell Lines As Compared to HapMap Trios, and Relation to Fragile Site Location

Por Ruan, Xiaoyang, Kocher, Jean-Pierre A., Pommier, Yves, Liu, Hongfang, Reinhold, William C.
Publicado em 2012

SNPPicker: High quality tag SNP selection across multiple populations

Por Sicotte, Hugues, Rider, David N, Poland, Gregory A, Dhiman, Neelam, Kocher, Jean-Pierre A
Publicado em 2011

Epidaurus: aggregation and integration analysis of prostate cancer epigenome

Por Wang, Liguo, Huang, Haojie, Dougherty, Gregory, Zhao, Yu, Hossain, Asif, Kocher, Jean-Pierre A.
Publicado no Nucleic Acids Res (2015)

Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

Por Baheti, Saurabh, Kanwar, Rahul, Goelzenleuchter, Meike, Kocher, Jean-Pierre A., Beutler, Andreas S., Sun, Zhifu
Publicado no BMC Genomics (2016)

CircularLogo: A lightweight web application to visualize intra-motif dependencies

Por Ye, Zhenqing, Ma, Tao, Kalmbach, Michael T., Dasari, Surendra, Kocher, Jean-Pierre A., Wang, Liguo
Publicado no BMC Bioinformatics (2017)

Linnorm: improved statistical analysis for single cell RNA-seq expression data

Por Yip, Shun H., Wang, Panwen, Kocher, Jean-Pierre A., Sham, Pak Chung, Wang, Junwen
Publicado no Nucleic Acids Res (2017)

Linnorm: improved statistical analysis for single cell RNA-seq expression data

Por Yip, Shun H., Wang, Panwen, Kocher, Jean-Pierre A., Sham, Pak Chung, Wang, Junwen
Publicado no Nucleic Acids Res (2017)

Classification of Medication Status Change in Clinical Narratives

Por Sohn, Sunghwan, Murphy, Sean P., Masanz, James J., Kocher, Jean-Pierre A., Savova, Guergana K.
Publicado em 2010

Genomes or exomes: evaluation of cost, time and coverage

Por Middha, Sumit, Theis, Jeanne L, Goodloe, Adele H, Olson, Timothy M, Kocher, Jean-Pierre A
Publicado em 2011

Multilevel Parallelization of AutoDock 4.2

Por Norgan Andrew P, Coffman Paul K, Kocher Jean-Pierre A, Katzmann David J, Sosa Carlos P
Publicado em 2011-04-01