Seeing elegance in the gene regulatory networks of the worm

Por Van Nostrand, Eric L., Kim, Stuart K.
Publicado em 2011

Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions

Por Van Nostrand, Eric L., Kim, Stuart K.
Publicado em 2013

Experimental and computational considerations in the study of RNA binding protein-RNA interactions

Por Van Nostrand, Eric L, Huelga, Stephanie C., Yeo, Gene W
Publicado no Adv Exp Med Biol (2016)

Advances and challenges in the detection of transcriptome‐wide protein–RNA interactions

Por Wheeler, Emily C., Van Nostrand, Eric L., Yeo, Gene W.
Publicado no Wiley Interdiscip Rev RNA (2017)

Roles of the Developmental Regulator unc-62/Homothorax in Limiting Longevity in Caenorhabditis elegans

Por Van Nostrand, Eric L., Sánchez-Blanco, Adolfo, Wu, Beijing, Nguyen, Andy, Kim, Stuart K.
Publicado em 2013

The Inflammatory Transcription Factors NFκB, STAT1 and STAT3 Drive Age-Associated Transcriptional Changes in the Human Kidney

Por O’Brown, Zach K., Van Nostrand, Eric L., Higgins, John P., Kim, Stuart K.
Publicado no PLoS Genet (2015)

Deactivation of the GATA Transcription Factor ELT-2 Is a Major Driver of Normal Aging in C. elegans

Por Mann, Frederick G., Van Nostrand, Eric L., Friedland, Ari E., Liu, Xiao, Kim, Stuart K.
Publicado no PLoS Genet (2016)

Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions

Por Van Nostrand, Eric L., Shishkin, Alexander, Pratt, Gabriel A., Nguyen, Thai B., Yeo, Gene W.
Publicado no Methods (2017)

RBP-Maps enables robust generation of splicing regulatory maps

Por Yee, Brian A., Pratt, Gabriel A., Graveley, Brenton R., Van Nostrand, Eric L., Yeo, Gene W.
Publicado no RNA (2019)

CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins

Por Van Nostrand, Eric L., Gelboin-Burkhart, Chelsea, Wang, Ruth, Pratt, Gabriel A., Blue, Steven M., Yeo, Gene W.
Publicado no Methods (2016)

Robust, cost-effective profiling of RNA binding protein targets with single-end crosslinking and immunoprecipitation (seCLIP)

Por Van Nostrand, Eric L., Nguyen, Thai B., Gelboin-Burkhart, Chelsea, Wang, Ruth, Blue, Steven M., Pratt, Gabriel A., Louie, Ashley L., Yeo, Gene W.
Publicado no Methods Mol Biol (2017)

AMPK regulation of Raptor and TSC2 mediate metformin effects on transcriptional control of anabolism and inflammation

Por Van Nostrand, Jeanine L., Hellberg, Kristina, Luo, En-Ching, Van Nostrand, Eric L., Dayn, Alina, Yu, Jingting, Shokhirev, Maxim N., Dayn, Yelena, Yeo, Gene W., Shaw, Reuben J.
Publicado no Genes Dev (2020)

Pooled CRISPR screens with imaging on microRaft arrays reveals stress granule-regulatory factors

Por Wheeler, Emily C., Vu, Anthony Q., Einstein, Jaclyn M., DiSalvo, Matthew, Ahmed, Noorsher, Van Nostrand, Eric L., Shishkin, Alexander A., Jin, Wenhao, Allbritton, Nancy L., Yeo, Gene W.
Publicado no Nat Methods (2020)

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism

Por Scott, Daniel D., Trahan, Christian, Zindy, Pierre J., Aguilar, Lisbeth C., Delubac, Marc Y., Van Nostrand, Eric L., Adivarahan, Srivathsan, Wei, Karen E., Yeo, Gene W., Zenklusen, Daniel, Oeffinger, Marlene
Publicado no Nucleic Acids Res (2017)

Sequence, Structure, and Context Preferences of Human RNA Binding Proteins

Por Dominguez, Daniel, Freese, Peter, Alexis, Maria, Su, Amanda, Hochman, Myles, Palden, Tsultrim, Bazile, Cassandra, Lambert, Nicole J., Van Nostrand, Eric L, Pratt, Gabriel A., Yeo, Gene W., Graveley, Brenton R., Burge, Christopher B.
Publicado no Mol Cell (2018)

SONAR discovers RNA binding proteins from analysis of large-scale protein-protein interactomes

Por Brannan, Kristopher W., Jin, Wenhao, Huelga, Stephanie C., Banks, Charles A. S., Gilmore, Joshua M., Florens, Laurence, Washburn, Michael P., Van Nostrand, Eric L., Pratt, Gabriel A., Schwinn, Marie K., Daniels, Danette L., Yeo, Gene W.
Publicado no Mol Cell (2016)

Regulation of RNA editing by RNA-binding proteins in human cells

Por Quinones-Valdez, Giovanni, Tran, Stephen S., Jun, Hyun-Ik, Bahn, Jae Hoon, Yang, Ei-Wen, Zhan, Lijun, Brümmer, Anneke, Wei, Xintao, Van Nostrand, Eric L., Pratt, Gabriel A., Yeo, Gene W., Graveley, Brenton R., Xiao, Xinshu
Publicado no Commun Biol (2019)

Robust transcriptome-wide discovery of RNA binding protein binding sites with enhanced CLIP (eCLIP)

Por Van Nostrand, Eric L., Pratt, Gabriel A., Shishkin, Alexander A., Gelboin-Burkhart, Chelsea, Fang, Mark Y., Sundararaman, Balaji, Blue, Steven M., Nguyen, Thai B., Surka, Christine, Elkins, Keri, Stanton, Rebecca, Rigo, Frank, Guttman, Mitchell, Yeo, Gene W.
Publicado no Nat Methods (2016)

Interaction landscape of inherited polymorphisms with somatic events in cancer

Por Carter, Hannah, Marty, Rachel, Hofree, Matan, Gross, Andy, Jensen, James, Fisch, Kathleen M., Wu, Xingyu, DeBoever, Christopher, Van Nostrand, Eric L, Song, Yan, Wheeler, Emily, Kreisberg, Jason F., Lippman, Scott M., Yeo, Gene, Gutkind, J. Silvio, Ideker, Trey
Publicado no Cancer Discov (2017)

Enhanced CLIP uncovers IMP protein-RNA targets in human pluripotent stem cells important for cell adhesion and survival

Por Conway, Anne E., Van Nostrand, Eric L., Pratt, Gabriel A., Aigner, Stefan, Wilbert, Melissa L., Sundararaman, Balaji, Freese, Peter, Lambert, Nicole J., Sathe, Shashank, Liang, Tiffany Y., Essex, Anthony, Landais, Severine, Burge, Christopher B., Jones, D. Leanne, Yeo, Gene W.
Publicado no Cell Rep (2016)