Genome Sequence-Independent Identification of RNA Editing Sites

por Zhang, Qing, Xiao, Xinshu
Publicado en Nat Methods (2015)

RASER: reads aligner for SNPs and editing sites of RNA

por Ahn, Jaegyoon, Xiao, Xinshu
Publicado en Bioinformatics (2015)

mountainClimber identifies alternative transcription start and polyadenylation sites in RNA-seq

por Cass, Ashley A, Xiao, Xinshu
Publicado en Cell Syst (2019)

DeepPASTA: deep neural network based polyadenylation site analysis

por Arefeen, Ashraful, Xiao, Xinshu, Jiang, Tao
Publicado en Bioinformatics (2019)

Decoding the Non-Coding Transcripts in Human Heart Failure

por Xiao, Xinshu (Grace), Touma, Marlin, Wang, Yibin
Publicado 2014

Analysis and design of RNA sequencing experiments for identifying RNA editing and other single-nucleotide variants

por Lee, Jae-Hyung, Ang, Jason K., Xiao, Xinshu
Publicado 2013

Intronic Splicing Enhancers, Cognate Splicing Factors and Context Dependent Regulation Rules

por Wang, Yang, Ma, Meng, Xiao, Xinshu, Wang, Zefeng
Publicado 2012

TAPAS: tool for alternative polyadenylation site analysis

por Arefeen, Ashraful, Liu, Juntao, Xiao, Xinshu, Jiang, Tao
Publicado en Bioinformatics (2018)

Coevolutionary networks of splicing cis-regulatory elements

por Xiao, Xinshu, Wang, Zefeng, Jang, Minyoung, Burge, Christopher B.
Publicado 2007

Structure-mediated modulation of mRNA abundance by A-to-I editing

por Brümmer, Anneke, Yang, Yun, Chan, Tracey W., Xiao, Xinshu
Publicado en Nat Commun (2017)

General and Specific Functions of Exonic Splicing Silencers in Splicing Control

por Wang, Zefeng, Xiao, Xinshu, Van Nostrand, Eric, Burge, Christopher B.
Publicado 2006

Noncoding RNAs in human saliva as potential disease biomarkers

por Lin, Xianzhi, Lo, Hsien-Chun, Wong, David T. W., Xiao, Xinshu
Publicado en Front Genet (2015)

Splice Site Strength-Dependent Activity and Genetic Buffering by Poly-G Runs

por Xiao, Xinshu, Wang, Zefeng, Jang, Minyoung, Nutiu, Razvan, Wang, Eric T., Burge, Christopher B.
Publicado 2009

Accurate identification of A-to-I RNA editing in human by transcriptome sequencing

por Bahn, Jae Hoon, Lee, Jae-Hyung, Li, Gang, Greer, Christopher, Peng, Guangdun, Xiao, Xinshu
Publicado 2012

Identification of Vascular and Hematopoietic Genes Downstream of etsrp by Deep Sequencing in Zebrafish

por Gomez, Gustavo, Lee, Jae-Hyung, Veldman, Matthew B., Lu, Jing, Xiao, Xinshu, Lin, Shuo
Publicado 2012

Inference of Splicing Regulatory Activities by Sequence Neighborhood Analysis

por Stadler, Michael B, Shomron, Noam, Yeo, Gene W, Schneider, Aniket, Xiao, Xinshu, Burge, Christopher B
Publicado 2006

Analysis of Transcriptome Complexity via RNA-Seq in Normal and Failing Murine Hearts

por Lee, Jae-Hyung, Gao, Chen, Peng, Guangdun, Greer, Christopher, Ren, Shuxun, Wang, Yibin, Xiao, Xinshu
Publicado 2011

The cardiotonic steroid digitoxin regulates alternative splicing through depletion of the splicing factors SRSF3 and TRA2B

por Anderson, Erik S., Lin, Chia-Ho, Xiao, Xinshu, Stoilov, Peter, Burge, Christopher B., Black, Douglas L.
Publicado 2012

Genomic Analysis of ADAR1 Binding and its Involvement in Multiple RNA Processing Pathways

por Bahn, Jae Hoon, Ahn, Jaegyoon, Lin, Xianzhi, Zhang, Qing, Lee, Jae-Hyung, Civelek, Mete, Xiao, Xinshu
Publicado en Nat Commun (2015)

Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins

por Hsiao, Yun-Hua Esther, Bahn, Jae Hoon, Lin, Xianzhi, Chan, Tak-Ming, Wang, Rena, Xiao, Xinshu
Publicado en Genome Res (2016)