Biological Interpretation of Complex Genomic Data

di Fisch, Kathleen M.
Pubblicato in Methods Mol Biol (2019)

OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing

di Meißner, Tobias, Fisch, Kathleen M, Gioia, Louis, Su, Andrew I
Pubblicato in BMC Med Genomics (2015)

Increased Fibrogenic Gene Expression in Multifidus Muscles of Patients with Chronic Versus Acute Lumbar Spine Pathology

di Shahidi, Bahar, Fisch, Kathleen M., Gibbons, Michael C., Ward, Samuel R.
Pubblicato in Spine (Phila Pa 1976) (2020)

Efficient population-scale variant analysis and prioritization with VAPr

di Birmingham, Amanda, Mark, Adam M, Mazzaferro, Carlo, Xu, Guorong, Fisch, Kathleen M
Pubblicato in Bioinformatics (2018)

Id3 Orchestrates Germinal Center B Cell Development

di Chen, Shuwen, Miyazaki, Masaki, Chandra, Vivek, Fisch, Kathleen M., Chang, Aaron N., Murre, Cornelis
Pubblicato in Mol Cell Biol (2016)

Interactive network visualization in Jupyter notebooks: visJS2jupyter

di Rosenthal, Sara Brin, Len, Julia, Webster, Mikayla, Gary, Aaron, Birmingham, Amanda, Fisch, Kathleen M
Pubblicato in Bioinformatics (2018)

Single-Cell Transcriptomes Reveal a Complex Cellular Landscape in the Middle Ear and Differential Capacities for Acute Response to Infection

di Ryan, Allen F., Nasamran, Chanond A., Pak, Kwang, Draf, Clara, Fisch, Kathleen M., Webster, Nicholas, Kurabi, Arwa
Pubblicato in Front Genet (2020)

Omics Pipe: a community-based framework for reproducible multi-omics data analysis

di Fisch, Kathleen M., Meißner, Tobias, Gioia, Louis, Ducom, Jean-Christophe, Carland, Tristan M., Loguercio, Salvatore, Su, Andrew I.
Pubblicato in Bioinformatics (2015)

Suppression of REDD1 in osteoarthritis cartilage, a novel mechanism for dysregulated mTOR signaling and defective autophagy

di Alvarez-Garcia, Oscar, Olmer, Merissa, Akagi, Ryuichiro, Akasaki, Yukio, Fisch, Kathleen M., Shen, Tao, Su, Andrew I., Lotz, Martin K.
Pubblicato in Osteoarthritis Cartilage (2016)

Increased DNA methylation and reduced expression of transcription factors in human osteoarthritis cartilage

di Alvarez-Garcia, Oscar, Fisch, Kathleen M., Wineinger, Nathan E., Akagi, Ryuichiro, Saito, Masahiko, Sasho, Takahisa, Su, Andrew I., Lotz, Martin K
Pubblicato in Arthritis Rheumatol (2016)

Heterogeneous muscle gene expression patterns in patients with massive rotator cuff tears

di Gibbons, Michael C., Fisch, Kathleen M., Pichika, Rajeswari, Cheng, Timothy, Engler, Adam J., Schenk, Simon, Lane, John G., Singh, Anshu, Ward, Samuel R.
Pubblicato in PLoS One (2018)

Dysregulated circadian rhythm pathway in human osteoarthritis: NR1D1 and BMAL1 suppression alters TGF-β signaling in chondrocytes

di Akagi, Ryuichiro, Akatsu, Yorikazu, Fisch, Kathleen M., Alvarez-Garcia, Oscar, Teramura, Takeshi, Muramatsu, Yuta, Saito, Masahiko, Sasho, Takahisa, Su, Andrew I., Lotz, Martin K.
Pubblicato in Osteoarthritis Cartilage (2016)

Integrating Gene and Protein Expression Reveals Perturbed Functional Networks in Alzheimer’s Disease

di Canchi, Saranya, Raao, Balaji, Masliah, Deborah, Rosenthal, Sara Brin, Sasik, Roman, Fisch, Kathleen M., De Jager, Philip L., Bennett, David A., Rissman, Robert A.
Pubblicato in Cell Rep (2019)

Identification of transcription factors responsible for dysregulated networks in human osteoarthritis cartilage by global gene expression analysis

di Fisch, Kathleen M., Gamini, Ramya, Alvarez-Garcia, Oscar, Akagi, Ryuichiro, Saito, Masahiko, Muramatsu, Yuta, Sasho, Takahisa, Koziol, James A., Su, Andrew I., Lotz, Martin K.
Pubblicato in Osteoarthritis Cartilage (2018)

Characterization of alternative splicing events in HPV negative head and neck squamous cell carcinoma identifies an oncogenic DOCK5 variant

di Liu, Chao, Guo, Theresa, Xu, Guorong, Sakai, Akihiro, Ren, Shuling, Fukusumi, Takahito, Ando, Mizuo, Sadat, Sayed, Saito, Yuki, Khan, Zubair, Fisch, Kathleen M., Califano, Joseph
Pubblicato in Clin Cancer Res (2018)

DNA methylation changes associated with Parkinson’s disease progression: outcomes from the first longitudinal genome-wide methylation analysis in blood

di Henderson-Smith, Adrienne, Fisch, Kathleen M., Hua, Jianping, Liu, Ganqiang, Ricciardelli, Eugenia, Jepsen, Kristen, Huentelman, Mathew, Stalberg, Gabriel, Edland, Steven D., Scherzer, Clemens R., Dunckley, Travis, Desplats, Paula
Pubblicato in Epigenetics (2019)

Mechanisms of Vascular Permeability and Remodeling Associated with Hemarthrosis in Factor VIII-Deficient Mice

di Cooke, Esther J, Wyseure, Tine, Zhou, Jenny Y, Gopal, Srila, Nasamran, Chanond A, Fisch, Kathleen M, Manon-Jensen, Tina, Karsdal, Morten A, Mosnier, Laurent O, von Drygalski, Annette
Pubblicato in J Thromb Haemost (2019)

Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage

di Wei, Na, Shi, Yi, Truong, Lan N., Fisch, Kathleen M., Xu, Tao, Gardiner, Elisabeth, Fu, Guangsen, Hsu, Yun-Shiuan Olivia, Kishi, Shuji, Su, Andrew I., Wu, Xiaohua, Yang, Xiang-Lei
Pubblicato in Mol Cell (2014)

Non-Coding Transcription Instructs Cohesin-Dependent Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate

di Isoda, Takeshi, Moore, Amanda J, He, Zhaoren, Chandra, Vivek, Aida, Masatoshi, Denholtz, Matthew, van Hamburg, Jan Piet, Fisch, Kathleen M, Chang, Aaron N, Fahl, Shawn, Wiest, David L., Murre, Cornelis
Pubblicato in Cell (2017)

Differential blood DNA methylation across Lewy body dementias

di Nasamran, Chanond A., Sachan, Anubhav Nikunj Singh, Mott, Jennifer, Kuras, Yuliya I., Scherzer, Clemens R., Study, Harvard Biomarkers, Ricciardelli, Eugenia, Jepsen, Kristen, Edland, Steven D., Fisch, Kathleen M., Desplats, Paula
Pubblicato in Alzheimers Dement (Amst) (2021)