Replisome stalling and stabilization at CGG repeats that are responsible for chromosomal fragility

Por Voineagu, Irina, Surka, Christine F., Shishkin, Alexander A., Krasilnikova, Maria M., Mirkin, Sergei M.
Publicado em 2009

Expansion of Interstitial Telomeric Sequences in Yeast

Por Aksenova, Anna Y., Han, Gil, Shishkin, Alexander A., Volkov, Kirill V., Mirkin, Sergei M.
Publicado no Cell Rep (2015)

Influence of RARα gene on MDR1 expression and P-glycoprotein function in human leukemic cells

Por Stromskaya, Tatjana P, Rybalkina, Ekaterina Y, Zabotina, Tatjana N, Shishkin, Alexander A, Stavrovskaya, Alla A
Publicado em 2005

Role of DNA polymerases in repeat-mediated genome instability

Por Shah, Kartik A., Shishkin, Alexander A., Voineagu, Irina, Pavlov, Youri I., Shcherbakova, Polina V., Mirkin, Sergei M.
Publicado em 2012

Genome-wide Screen Identifies Pathways that Govern GAA/TTC Repeat Fragility and Expansions in Dividing and Nondividing Yeast Cells

Por Zhang, Yu, Shishkin, Alexander A., Nishida, Yuri, Marcinkowski-Desmond, Dana, Saini, Natalie, Volkov, Kirill V., Mirkin, Sergei M., Lobachev, Kirill S.
Publicado em 2012

Genome rearrangements caused by interstitial telomeric sequences in yeast

Por Aksenova, Anna Y., Greenwell, Patricia W., Dominska, Margaret, Shishkin, Alexander A., Kim, Jane C., Petes, Thomas D., Mirkin, Sergei M.
Publicado em 2013

Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs

Por Chen, Jenny, Shishkin, Alexander A., Zhu, Xiaopeng, Kadri, Sabah, Maza, Itay, Guttman, Mitchell, Hanna, Jacob H., Regev, Aviv, Garber, Manuel
Publicado no Genome Biol (2016)

Large-scale expansions of Friedreich’s ataxia GAA repeats in yeast

Por Shishkin, Alexander A., Voineagu, Irina, Matera, Robert, Cherng, Nicole, Chernet, Brook T., Krasilnikova, Maria M., Narayanan, Vidhya, Lobachev, Kirill S., Mirkin, Sergei M.
Publicado em 2009

Expansions, contractions, and fragility of the spinocerebellar ataxia type 10 pentanucleotide repeat in yeast

Por Cherng, Nicole, Shishkin, Alexander A., Schlager, Lucas I., Tuck, Ryan H., Sloan, Laura, Matera, Robert, Sarkar, Partha S., Ashizawa, Tetsuo, Freudenreich, Catherine H., Mirkin, Sergei M.
Publicado em 2011

Simultaneous generation of many RNA-seq libraries in a single reaction

Por Shishkin, Alexander A, Giannoukos, Georgia, Kucukural, Alper, Ciulla, Dawn, Busby, Michele, Surka, Christine, Chen, Jenny, Bhattacharyya, Roby P, Rudy, Robert F, Patel, Milesh M, Novod, Nathaniel, Hung, Deborah T, Gnirke, Andreas, Garber, Manuel, Guttman, Mitchell, Livny, Jonathan
Publicado no Nat Methods (2015)

Robust transcriptome-wide discovery of RNA binding protein binding sites with enhanced CLIP (eCLIP)

Por Van Nostrand, Eric L., Pratt, Gabriel A., Shishkin, Alexander A., Gelboin-Burkhart, Chelsea, Fang, Mark Y., Sundararaman, Balaji, Blue, Steven M., Nguyen, Thai B., Surka, Christine, Elkins, Keri, Stanton, Rebecca, Rigo, Frank, Guttman, Mitchell, Yeo, Gene W.
Publicado no Nat Methods (2016)

The Xist lncRNA directly interacts with SHARP to silence transcription through HDAC3

Por McHugh, Colleen A., Chen, Chun-Kan, Chow, Amy, Surka, Christine F., Tran, Christina, McDonel, Patrick, Pandya-Jones, Amy, Blanco, Mario, Burghard, Christina, Moradian, Annie, Sweredoski, Michael J., Shishkin, Alexander A., Su, Julia, Lander, Eric S., Hess, Sonja, Plath, Kathrin, Guttman, Mitchell
Publicado no Nature (2015)

Transcriptional and Epigenetic Dynamics During Specification of Human Embryonic Stem Cells

Por Gifford, Casey A., Ziller, Michael J., Gu, Hongcang, Trapnell, Cole, Donaghey, Julie, Tsankov, Alexander, Shalek, Alex K., Kelley, David R., Shishkin, Alexander A., Issner, Robbyn, Zhang, Xiaolan, Coyne, Michael, Fostel, Jennifer L., Holmes, Laurie, Meldrim, Jim, Guttman, Mitchell, Epstein, Charles, Park, Hongkun, Kohlbacher, Oliver, Rinn, John, Gnirke, Andreas, Lander, Eric S., Bernstein, Bradley E., Meissner, Alexander
Publicado em 2013

Genetic and Epigenetic Fine-Mapping of Causal Autoimmune Disease Variants

Por Farh, Kyle Kai-How, Marson, Alexander, Zhu, Jiang, Kleinewietfeld, Markus, Housley, William J., Beik, Samantha, Shoresh, Noam, Whitton, Holly, Ryan, Russell J.H., Shishkin, Alexander A., Hatan, Meital, Carrasco-Alfonso, Marlene J., Mayer, Dita, Luckey, C. John, Patsopoulos, Nikolaos A., De Jager, Philip L., Kuchroo, Vijay K., Epstein, Charles B, Daly, Mark J., Hafler, David A., Bernstein, Bradley E.
Publicado no Nature (2014)