Next generation software for functional trend analysis

Yazar: Berriz, Gabriel F., Beaver, John E., Cenik, Can, Tasan, Murat, Roth, Frederick P.
Baskı/Yayın Bilgisi 2009

Selecting causal genes from genome-wide association studies via functionally-coherent subnetworks

Yazar: Taşan, Murat, Musso, Gabriel, Hao, Tong, Vidal, Marc, MacRae, Calum A., Roth, Frederick P.
Yayımlandı Nat Methods (2014)

An en masse phenotype and function prediction system for Mus musculus

Yazar: Taşan, Murat, Tian, Weidong, Hill, David P, Gibbons, Francis D, Blake, Judith A, Roth, Frederick P
Baskı/Yayın Bilgisi 2008

FuncBase : a resource for quantitative gene function annotation

Yazar: Beaver, John E., Taşan, Murat, Gibbons, Francis D., Tian, Weidong, Hughes, Timothy R., Roth, Frederick P.
Baskı/Yayın Bilgisi 2010

A Resource of Quantitative Functional Annotation for Homo sapiens Genes

Yazar: Taşan, Murat, Drabkin, Harold J., Beaver, John E., Chua, Hon Nian, Dunham, Julie, Tian, Weidong, Blake, Judith A., Roth, Frederick P.
Baskı/Yayın Bilgisi 2012

Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function

Yazar: Tian, Weidong, Zhang, Lan V, Taşan, Murat, Gibbons, Francis D, King, Oliver D, Park, Julie, Wunderlich, Zeba, Cherry, J Michael, Roth, Frederick P
Baskı/Yayın Bilgisi 2008

Genome Analysis Reveals Interplay between 5′UTR Introns and Nuclear mRNA Export for Secretory and Mitochondrial Genes

Yazar: Cenik, Can, Chua, Hon Nian, Zhang, Hui, Tarnawsky, Stefan P., Akef, Abdalla, Derti, Adnan, Tasan, Murat, Moore, Melissa J., Palazzo, Alexander F., Roth, Frederick P.
Baskı/Yayın Bilgisi 2011

Prioritizing causal disease genes using unbiased genomic features

Yazar: Deo, Rahul C, Musso, Gabriel, Tasan, Murat, Tang, Paul, Poon, Annie, Yuan, Christiana, Felix, Janine F, Vasan, Ramachandran S, Beroukhim, Rameen, De Marco, Teresa, Kwok, Pui-Yan, MacRae, Calum A, Roth, Frederick P
Yayımlandı Genome Biol (2014)

Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish

Yazar: Musso, Gabriel, Tasan, Murat, Mosimann, Christian, Beaver, John E., Plovie, Eva, Carr, Logan A., Chua, Hon Nian, Dunham, Julie, Zuberi, Khalid, Rodriguez, Harold, Morris, Quaid, Zon, Leonard, Roth, Frederick P., MacRae, Calum A.
Baskı/Yayın Bilgisi 2014

Systematic exploration of synergistic drug pairs

Yazar: Cokol, Murat, Chua, Hon Nian, Tasan, Murat, Mutlu, Beste, Weinstein, Zohar B, Suzuki, Yo, Nergiz, Mehmet E, Costanzo, Michael, Baryshnikova, Anastasia, Giaever, Guri, Nislow, Corey, Myers, Chad L, Andrews, Brenda J, Boone, Charles, Roth, Frederick P
Baskı/Yayın Bilgisi 2011

Large-Scale Identification and Analysis of Suppressive Drug Interactions

Yazar: Cokol, Murat, Weinstein, Zohar B., Yilancioglu, Kaan, Tasan, Murat, Doak, Allison, Cansever, Dilay, Mutlu, Beste, Li, Siyang, Rodriguez-Esteban, Raul, Akhmedov, Murodzhon, Guvenek, Aysegul, Cokol, Melike, Cetiner, Selim, Giaever, Guri, Iossifov, Ivan, Nislow, Corey, Shoichet, Brian, Roth, Frederick P.
Yayımlandı Chem Biol (2014)

An experimentally derived confidence score for binary protein-protein interactions

Yazar: Braun, Pascal, Tasan, Murat, Dreze, Matija, Barrios-Rodiles, Miriam, Lemmens, Irma, Yu, Haiyuan, Sahalie, Julie M, Murray, Ryan R, Roncari, Luba, de Smet, Anne-Sophie, Venkatesan, Kavitha, Rual, Jean-François, Cusick, Michael E, Pawson, Tony, Hill, David E, Tavernier, Jan, Wrana, Jeffrey L, Roth, Frederick P, Vidal, Marc
Baskı/Yayın Bilgisi 2008

A framework for exhaustively mapping functional missense variants

Yazar: Weile, Jochen, Sun, Song, Cote, Atina G, Knapp, Jennifer, Verby, Marta, Mellor, Joseph C, Wu, Yingzhou, Pons, Carles, Wong, Cassandra, van Lieshout, Natascha, Yang, Fan, Tasan, Murat, Tan, Guihong, Yang, Shan, Fowler, Douglas M, Nussbaum, Robert, Bloom, Jesse D, Vidal, Marc, Hill, David E, Aloy, Patrick, Roth, Frederick P
Yayımlandı Mol Syst Biol (2017)

Metabolite profiling of blood from individuals undergoing planned myocardial infarction reveals early markers of myocardial injury

Yazar: Lewis, Gregory D., Wei, Ru, Liu, Emerson, Yang, Elaine, Shi, Xu, Martinovic, Maryann, Farrell, Laurie, Asnani, Aarti, Cyrille, Marcoli, Ramanathan, Arvind, Shaham, Oded, Berriz, Gabriel, Lowry, Patricia A., Palacios, Igor F., Taşan, Murat, Roth, Frederick P., Min, Jiangyong, Baumgartner, Christian, Keshishian, Hasmik, Addona, Terri, Mootha, Vamsi K., Rosenzweig, Anthony, Carr, Steven A., Fifer, Michael A., Sabatine, Marc S., Gerszten, Robert E.
Baskı/Yayın Bilgisi 2008

Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism

Yazar: Corominas, Roser, Yang, Xinping, Lin, Guan Ning, Kang, Shuli, Shen, Yun, Ghamsari, Lila, Broly, Martin, Rodriguez, Maria, Tam, Stanley, Wanamaker, Shelly A., Fan, Changyu, Yi, Song, Tasan, Murat, Lemmens, Irma, Kuang, Xingyan, Zhao, Nan, Malhotra, Dheeraj, Michaelson, Jacob J., Vacic, Vladimir, Calderwood, Michael A., Roth, Frederick P., Tavernier, Jan, Horvath, Steve, Salehi-Ashtiani, Kourosh, Korkin, Dmitry, Sebat, Jonathan, Hill, David E., Hao, Tong, Vidal, Marc, Iakoucheva, Lilia M.
Baskı/Yayın Bilgisi 2014

An inter‐species protein–protein interaction network across vast evolutionary distance

Yazar: Zhong, Quan, Pevzner, Samuel J, Hao, Tong, Wang, Yang, Mosca, Roberto, Menche, Jörg, Taipale, Mikko, Taşan, Murat, Fan, Changyu, Yang, Xinping, Haley, Patrick, Murray, Ryan R, Mer, Flora, Gebreab, Fana, Tam, Stanley, MacWilliams, Andrew, Dricot, Amélie, Reichert, Patrick, Santhanam, Balaji, Ghamsari, Lila, Calderwood, Michael A, Rolland, Thomas, Charloteaux, Benoit, Lindquist, Susan, Barabási, Albert‐László, Hill, David E, Aloy, Patrick, Cusick, Michael E, Xia, Yu, Roth, Frederick P, Vidal, Marc
Yayımlandı Mol Syst Biol (2016)

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network

Yazar: Mukhtar, M. Shahid, Carvunis, Anne-Ruxandra, Dreze, Matija, Epple, Petra, Steinbrenner, Jens, Moore, Jonathan, Tasan, Murat, Galli, Mary, Hao, Tong, Nishimura, Marc T., Pevzner, Samuel J., Donovan, Susan E., Ghamsari, Lila, Santhanam, Balaji, Romero, Viviana, Poulin, Matthew M., Gebreab, Fana, Gutierrez, Bryan J., Tam, Stanley, Monachello, Dario, Boxem, Mike, Harbort, Christopher J., McDonald, Nathan, Gai, Lantian, Chen, Huaming, He, Yijian, Vandenhaute, Jean, Roth, Frederick P., Hill, David E., Ecker, Joseph R., Vidal, Marc, Beynon, Jim, Braun, Pascal, Dangl, Jeffery L.
Baskı/Yayın Bilgisi 2011

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Yazar: Simonis, Nicolas, Rual, Jean-François, Carvunis, Anne-Ruxandra, Tasan, Murat, Lemmens, Irma, Hirozane-Kishikawa, Tomoko, Hao, Tong, Sahalie, Julie M, Venkatesan, Kavitha, Gebreab, Fana, Cevik, Sebiha, Klitgord, Niels, Fan, Changyu, Braun, Pascal, Li, Ning, Ayivi-Guedehoussou, Nono, Dann, Elizabeth, Bertin, Nicolas, Szeto, David, Dricot, Amélie, Yildirim, Muhammed A, Lin, Chenwei, de Smet, Anne-Sophie, Kao, Huey-Ling, Simon, Christophe, Smolyar, Alex, Ahn, Jin Sook, Tewari, Muneesh, Boxem, Mike, Milstein, Stuart, Yu, Haiyuan, Dreze, Matija, Vandenhaute, Jean, Gunsalus, Kristin C, Cusick, Michael E, Hill, David E, Tavernier, Jan, Roth, Frederick P, Vidal, Marc
Baskı/Yayın Bilgisi 2009

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

Yazar: Peña-Castillo, Lourdes, Tasan, Murat, Myers, Chad L, Lee, Hyunju, Joshi, Trupti, Zhang, Chao, Guan, Yuanfang, Leone, Michele, Pagnani, Andrea, Kim, Wan Kyu, Krumpelman, Chase, Tian, Weidong, Obozinski, Guillaume, Qi, Yanjun, Mostafavi, Sara, Lin, Guan Ning, Berriz, Gabriel F, Gibbons, Francis D, Lanckriet, Gert, Qiu, Jian, Grant, Charles, Barutcuoglu, Zafer, Hill, David P, Warde-Farley, David, Grouios, Chris, Ray, Debajyoti, Blake, Judith A, Deng, Minghua, Jordan, Michael I, Noble, William S, Morris, Quaid, Klein-Seetharaman, Judith, Bar-Joseph, Ziv, Chen, Ting, Sun, Fengzhu, Troyanskaya, Olga G, Marcotte, Edward M, Xu, Dong, Hughes, Timothy R, Roth, Frederick P
Baskı/Yayın Bilgisi 2008

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

Yazar: Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Baskı/Yayın Bilgisi 2012