Integration of tumor genomic data with cell lines using multi-dimensional network modules improves cancer pharmacogenomics

Yazar: Webber, James T., Kaushik, Swati, Bandyopadhyay, Sourav
Yayımlandı Cell Syst (2018)

mzResults: An Interactive Viewer for Interrogation and Distribution of Proteomics Results

Yazar: Webber, James T., Askenazi, Manor, Marto, Jarrod A.
Baskı/Yayın Bilgisi 2011

mzServer: Web-based Programmatic Access for Mass Spectrometry Data Analysis

Yazar: Askenazi, Manor, Webber, James T., Marto, Jarrod A.
Baskı/Yayın Bilgisi 2011

Separation and Characterization of Respirable Amphibole Fibers from Libby, Montana

Yazar: Webber, James S., Blake, David J., Ward, Tony J., Pfau, Jean C.
Baskı/Yayın Bilgisi 2008

A Nanoflow Low Pressure High Peak Capacity Single Dimension LC MS/MS Platform for High throughput In Depth Analysis of Mammalian Proteomes

Yazar: Zhou, Feng, Lu, Yu, Ficarro, Scott B., Webber, James T., Marto, Jarrod A.
Baskı/Yayın Bilgisi 2012

An Online Nanoflow RP-SAX-RP LC-MS/MS Platform for Efficient and In-depth Proteome Sequence Analysis of Complex Organisms

Yazar: Zhou, Feng, Sikorski, Timothy W., Ficarro, Scott B., Webber, James T., Marto, Jarrod A.
Baskı/Yayın Bilgisi 2011

Library Dependent LC-MS/MS Acquisition via mzAPI/Live

Yazar: Webber, James T., Askenazi, Manor, Ficarro, Scott B., Iglehart, Max A., Marto, Jarrod A.
Baskı/Yayın Bilgisi 2013

Fate of Libby Amphibole Fibers When Burning Contaminated Firewood

Yazar: Ward, Tony J., Hart, Julie F., Spear, Terry M., Meyer, Brienne J., Webber, James S.
Baskı/Yayın Bilgisi 2009

An Optimized Chromatographic Strategy for Multiplexing In Parallel Reaction Monitoring Mass Spectrometry: Insights from Quantitation of Activated Kinases

Yazar: Urisman, Anatoly, Levin, Rebecca S., Gordan, John D., Webber, James T., Hernandez, Hilda, Ishihama, Yasushi, Shokat, Kevan M., Burlingame, Alma L.
Yayımlandı Mol Cell Proteomics (2017)

multiplierz: an extensible API based desktop environment for proteomics data analysis

Yazar: Parikh, Jignesh R, Askenazi, Manor, Ficarro, Scott B, Cashorali, Tanya, Webber, James T, Blank, Nathaniel C, Zhang, Yi, Marto, Jarrod A
Baskı/Yayın Bilgisi 2009

Online Nanoflow Multidimensional Fractionation for High Efficiency Phosphopeptide Analysis

Yazar: Ficarro, Scott B., Zhang, Yi, Carrasco-Alfonso, Marlene J., Garg, Brijesh, Adelmant, Guillaume, Webber, James T., Luckey, C. John, Marto, Jarrod A.
Baskı/Yayın Bilgisi 2011

C/EBPα and DEK coordinately regulate myeloid differentiation

Yazar: Koleva, Rositsa I., Ficarro, Scott B., Radomska, Hanna S., Carrasco-Alfonso, Marlene J., Alberta, John A., Webber, James T., Luckey, C. John, Marcucci, Guido, Tenen, Daniel G., Marto, Jarrod A.
Baskı/Yayın Bilgisi 2012

Kinome rewiring reveals AURKA limits PI3K-pathway inhibitor efficacy in breast cancer

Yazar: Donnella, Hayley J, Webber, James T, Levin, Rebecca S, Camarda, Roman, Momcilovic, Olga, Bayani, Nora, Shah, Khyati N, Korkola, James, Shokat, Kevan M, Goga, Andrei, Gordan, John D, Bandyopadhyay, Sourav
Yayımlandı Nat Chem Biol (2018)

Oncogene Mimicry as a Mechanism of Primary Resistance to BRAF Inhibitors

Yazar: Sos, Martin L., Levin, Rebecca S., Gordan, John D., Oses-Prieto, Juan A., Webber, James T., Salt, Megan, Hann, Byron, Burlingame, Alma L., McCormick, Frank, Bandyopadhyay, Sourav, Shokat, Kevan M.
Yayımlandı Cell Rep (2014)

Aging hallmarks exhibit organ-specific temporal signatures

Yazar: Schaum, Nicholas, Lehallier, Benoit, Hahn, Oliver, Pálovics, Róbert, Hosseinzadeh, Shayan, Lee, Song E., Sit, Rene, Lee, Davis P., Losada, Patricia Morán, Zardeneta, Macy E., Fehlmann, Tobias, Webber, James, McGeever, Aaron, Calcuttawala, Kruti, Zhang, Hui, Berdnik, Daniela, Mathur, Vidhu, Tan, Weilun, Zee, Alexander, Tan, Michelle, Pisco, Angela, Karkanias, Jim, Neff, Norma F., Keller, Andreas, Darmanis, Spyros, Quake, Stephen R., Wyss-Coray, Tony
Yayımlandı Nature (2020)

UNBIASED PROTEOMIC PROFILING UNCOVERS A TARGETABLE GNAS/PKA/PP2A AXIS IN SMALL CELL LUNG CANCER STEM CELLS

Yazar: Coles, Garry L., Cristea, Sandra, Webber, James T., Levin, Rebecca S., Moss, Steven M., He, Andy, Sangodkar, Jaya, Hwang, Yeonjoo C., Arand, Julia, Drainas, Alexandros P., Mooney, Nancie A., Demeter, Janos, Spradlin, Jessica N., Mauch, Brandon, Le, Vicky, Shue, Yan Ting, Ko, Julie H., Lee, Myung Chang, Kong, Christina, Nomura, Daniel K., Ohlmeyer, Michael, Swaney, Danielle L., Jackson, Peter K., Narla, Goutham, Gordan, John D., Shokat, Kevan, Sage, Julien
Yayımlandı Cancer Cell (2020)

Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR

Yazar: Vanaerschot, Manu, Mann, Sabrina A., Webber, James T., Kamm, Jack, Bell, Sidney M., Bell, John, Hong, Si Noon, Nguyen, Minh Phuong, Chan, Lienna Y., Bhatt, Karan D., Tan, Michelle, Detweiler, Angela M., Espinosa, Alex, Wu, Wesley, Batson, Joshua, Dynerman, David, Wadford, Debra A., Puschnik, Andreas S., Neff, Norma, Ahyong, Vida, Miller, Steve, Ayscue, Patrick, Tato, Cristina M., Paul, Simon, Kistler, Amy L., DeRisi, Joseph L., Crawford, Emily D.
Yayımlandı J Clin Microbiol (2020)

Isocitrate dehydrogenase mutations confer dasatinib hypersensitivity and SRC-dependence in intrahepatic cholangiocarcinoma

Yazar: Saha, Supriya K., Gordan, John D., Kleinstiver, Benjamin P., Vu, Phuong, Najem, Mortada S., Yeo, Jia-Chi, Shi, Lei, Kato, Yasutaka, Levin, Rebecca S., Webber, James T., Damon, Leah J., Egan, Regina K., Greninger, Patricia, McDermott, Ultan, Garnett, Mathew J., Jenkins, Roger L., Rieger-Christ, Kimberly M., Sullivan, Travis B., Hezel, Aram F., Liss, Andrew S., Mizukami, Yusuke, Goyal, Lipika, Ferrone, Cristina R., Zhu, Andrew X., Joung, J. Keith, Shokat, Kevan M., Benes, Cyril H., Bardeesy, Nabeel
Yayımlandı Cancer Discov (2016)

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

Yazar: Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Baskı/Yayın Bilgisi 2012

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris: The Tabula Muris Consortium

Yazar: Schaum, Nicholas, Karkanias, Jim, Neff, Norma F., May, Andrew P., Quake, Stephen R., Wyss-Coray, Tony, Darmanis, Spyros, Batson, Joshua, Botvinnik, Olga, Chen, Michelle B., Chen, Steven, Green, Foad, Jones, Robert, Maynard, Ashley, Penland, Lolita, Pisco, Angela Oliveira, Sit, Rene V., Stanley, Geoffrey M., Webber, James T., Zanini, Fabio, Baghel, Ankit S, Bakerman, Isaac, Bansal, Ishita, Berdnik, Daniela, Bilen, Biter, Brownfield, Douglas, Cain, Corey, Chen, Michelle B., Chen, Steven, Cho, Min, Cirolia, Giana, Conley, Stephanie D., Darmanis, Spyros, Demers, Aaron, Demir, Kubilay, de Morree, Antoine, Divita, Tessa, du Bois, Haley, Dulgeroff, Laughing Bear Torrez, Ebadi, Hamid, Espinoza, F. Hernán, Fish, Matt, Gan, Qiang, George, Benson M., Gillich, Astrid, Green, Foad, Genetiano, Geraldine, Gu, Xueying, Gulati, Gunsagar S., Hang, Yan, Hosseinzadeh, Shayan, Huang, Albin, Iram, Tal, Isobe, Taichi, Ives, Feather, Jones, Robert, Kao, Kevin S., Karnam, Guruswamy, Kershner, Aaron M., Kiss, Bernhard M., Kong, William, Kumar, Maya E., Lam, Jonathan, Lee, Davis P., Lee, Song E., Li, Guang, Li, Qingyun, Liu, Ling, Lo, Annie, Lu, Wan-Jin, Manjunath, Anoop, May, Andrew P., May, Kaia L., May, Oliver L., Maynard, Ashley, McKay, Marina, Metzger, Ross J., Mignardi, Marco, Min, Dullei, Nabhan, Ahmad N., Neff, Norma F., Ng, Katharine M., Noh, Joseph, Patkar, Rasika, Peng, Weng Chuan, Penland, Lolita, Puccinelli, Robert, Rulifson, Eric J., Schaum, Nicholas, Sikandar, Shaheen S., Sinha, Rahul, Sit, Rene V., Szade, Krzysztof, Tan, Weilun, Tato, Cristina, Tellez, Krissie, Travaglini, Kyle J., Tropini, Carolina, Waldburger, Lucas, van Weele, Linda J., Wosczyna, Michael N., Xiang, Jinyi, Xue, Soso, Youngyunpipatkul, Justin, Zanini, Fabio, Zardeneta, Macy E., Zhang, Fan, Zhou, Lu, Bansal, Ishita, Chen, Steven, Cho, Min, Cirolia, Giana, Darmanis, Spyros, Demers, Aaron, Divita, Tessa, Ebadi, Hamid, Genetiano, Geraldine, Green, Foad, Hosseinzadeh, Shayan, Ives, Feather, Lo, Annie, May, Andrew P., Maynard, Ashley, McKay, Marina, Neff, Norma F., Penland, Lolita, Sit, Rene V., Tan, Weilun, Waldburger, Lucas, oungyunpipatkul, Justin Y, Batson, Joshua, Botvinnik, Olga, Castro, Paola, Croote, Derek, Darmanis, Spyros, DeRisi, Joseph L., Karkanias, Jim, Pisco, Angela Oliveira, Stanley, Geoffrey M., Webber, James T., Zanini, Fabio, Baghel, Ankit S., Bakerman, Isaac, Batson, Joshua, Bilen, Biter, Botvinnik, Olga, Brownfield, Douglas, Chen, Michelle B., Darmanis, Spyros, Demir, Kubilay, de Morree, Antoine, Ebadi, Hamid, Espinoza, F. Hernán, Fish, Matt, Gan, Qiang, George, Benson M., Gillich, Astrid, Gu, Xueying, Gulati, Gunsagar S., Hang, Yan, Huang, Albin, Iram, Tal, Isobe, Taichi, Karnam, Guruswamy, Kershner, Aaron M., Kiss, Bernhard M., Kong, William, Kuo, Christin S., Lam, Jonathan, Lehallier, Benoit, Li, Guang, Li, Qingyun, Liu, Ling, Lu, Wan-Jin, Min, Dullei, Nabhan, Ahmad N., Ng, Katharine M., Nguyen, Patricia K., Patkar, Rasika, Peng, Weng Chuan, Penland, Lolita, Rulifson, Eric J., Schaum, Nicholas, Sikandar, Shaheen S., Sinha, Rahul, Szade, Krzysztof, Tan, Serena Y., Tellez, Krissie, Travaglini, Kyle J., Tropini, Carolina, van Weele, Linda J., Wang, Bruce M., Wosczyna, Michael N., Xiang, Jinyi, Yousef, Hanadie, Zhou, Lu, Batson, Joshua, Botvinnik, Olga, Chen, Steven, Darmanis, Spyros, Green, Foad, May, Andrew P., Maynard, Ashley, Pisco, Angela Oliveira, Quake, Stephen R., Schaum, Nicholas, Stanley, Geoffrey M., Webber, James T., Wyss-Coray, Tony, Zanini, Fabio, Beachy, Philip A., Chan, Charles K. F., de Morree, Antoine, George, Benson M., Gulati, Gunsagar S., Hang, Yan, Huang, Kerwyn Casey, Iram, Tal, Isobe, Taichi, Kershner, Aaron M., Kiss, Bernhard M., Kong, William, Li, Guang, Li, Qingyun, Liu, Ling, Lu, Wan-Jin, Nabhan, Ahmad N., Ng, Katharine M., Nguyen, Patricia K., Peng, Weng Chuan, Rulifson, Eric J., Schaum, Nicholas, Sikandar, Shaheen S., Sinha, Rahul, Szade, Krzysztof, Travaglini, Kyle J., Tropini, Carolina, Wang, Bruce M., Weinberg, Kenneth, Wosczyna, Michael N., Wu, Sean M., Yousef, Hanadie, Barres, Ben A., Beachy, Philip A., Chan, Charles K. F., Clarke, Michael F., Darmanis, Spyros, Huang, Kerwyn Casey, Karkanias, Jim, Kim, Seung K., Krasnow, Mark A., Kumar, Maya E., Kuo, Christin S., May, Andrew P., Metzger, Ross J., Neff, Norma F., Nusse, Roel, Nguyen, Patricia K., Rando, Thomas A., Sonnenburg, Justin, Wang, Bruce M., Weinberg, Kenneth, Weissman, Irving L., Wu, Sean M., Quake, Stephen R., Wyss-Coray, Tony
Yayımlandı Nature (2018)