Inferring steady state single-cell gene expression distributions from analysis of mesoscopic samples

od Mar, Jessica C, Rubio, Renee, Quackenbush, John
Izdano 2006

Gene-environment interactions reveal a homeostatic role for cholesterol metabolism during dietary folate perturbation in mice

od Kitami, Toshimori, Rubio, Renee, O'Brien, William, Quackenbush, John, Nadeau, Joseph H.
Izdano 2008

ENABLING CLINICAL CANCER GENOMICS FOR RARE MUTATIONS: COLD-PCR MAGNIFIES MUTATIONS PRIOR TO TARGETED AMPLICON RE-SEQUENCING

od Milbury, Coren A., Correll, Mick, Quackenbush, John, Rubio, Renee, Makrigiorgos, G. Mike
Izdano 2011

High Throughput Sequencing of Extracellular RNA from Human Plasma

od Danielson, Kirsty M., Rubio, Renee, Abderazzaq, Fieda, Das, Saumya, Wang, Yaoyu E.
Izdano u PLoS One (2017)

Ovarian reserve status in young women is associated with altered gene expression in membrana granulosa cells

od Skiadas, Christine C., Duan, Shenghua, Correll, Mick, Rubio, Renee, Karaca, Nilay, Ginsburg, Elizabeth S., Quackenbush, John, Racowsky, Catherine
Izdano 2012

Comparative gene expression analysis in mouse models for multiple sclerosis, Alzheimer’s disease and stroke for identifying commonly regulated and disease-specific gene changes

od Tseveleki, Vivian, Rubio, Renee, Vamvakas, Sotiris-Spyros, White, Joseph, Taoufik, Era, Petit, Edwige, Quackenbush, John, Probert, Lesley
Izdano 2010

Inference and validation of predictive gene networks from biomedical literature and gene expression data

od Olsen, Catharina, Fleming, Kathleen, Prendergast, Niall, Rubio, Renee, Emmert-Streib, Frank, Bontempi, Gianluca, Haibe-Kains, Benjamin, Quackenbush, John
Izdano 2014

Using shRNA experiments to validate gene regulatory networks

od Olsen, Catharina, Fleming, Kathleen, Prendergast, Niall, Rubio, Renee, Emmert-Streib, Frank, Bontempi, Gianluca, Quackenbush, John, Haibe-Kains, Benjamin
Izdano u Genom Data (2015)

Molecular processes during fat cell development revealed by gene expression profiling and functional annotation

od Hackl, Hubert, Burkard, Thomas Rainer, Sturn, Alexander, Rubio, Renee, Schleiffer, Alexander, Tian, Sun, Quackenbush, John, Eisenhaber, Frank, Trajanoski, Zlatko
Izdano 2005

Next-generation sequencing and microarray-based interrogation of microRNAs from formalin-fixed, paraffin-embedded tissue: Preliminary assessment of cross-platform concordance

od Kelly, Andrew D., Hill, Katherine E., Correll, Mick, Hu, Lan, Wang, Yaoyu, Rubio, Renee, Duan, Shenghua, Quackenbush, John, Spentzos, Dimitrios
Izdano 2013

Epstein–Barr virus nuclear antigen 3C regulated genes in lymphoblastoid cell lines

od Zhao, Bo, Mar, Jessica C., Maruo, Seiji, Lee, Sungwook, Gewurz, Benjamin E., Johannsen, Eric, Holton, Kristina, Rubio, Renee, Takada, Kenzo, Quackenbush, John, Kieff, Elliott
Izdano 2011

Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

od April, Craig, Klotzle, Brandy, Royce, Thomas, Wickham-Garcia, Eliza, Boyaniwsky, Tanya, Izzo, John, Cox, Donald, Jones, Wendell, Rubio, Renee, Holton, Kristina, Matulonis, Ursula, Quackenbush, John, Fan, Jian-Bing
Izdano 2009

A microRNA activity map of human mesenchymal tumors: connections to oncogenic pathways; an integrative transcriptomic study

od Fountzilas, Elena, Kelly, Andrew D, Perez-Atayde, Antonio R, Goldsmith, Jeffrey, Konstantinopoulos, Panagiotis A, Francoeur, Nancy, Correll, Mick, Rubio, Renee, Hu, Lan, Gebhardt, Mark C, Quackenbush, John, Spentzos, Dimitrios
Izdano 2012

Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue

od Chen, Dung-Tsa, Nasir, Aejaz, Culhane, Aedin, Venkataramu, Chinnambally, Fulp, William, Rubio, Renee, Wang, Tao, Agrawal, Deepak, McCarthy, Susan M, Gruidl, Mike, Bloom, Gregory, Anderson, Tove, White, Joe, Quackenbush, John, Yeatman, Timothy
Izdano 2009

Angiogenic mRNA and microRNA Gene Expression Signature Predicts a Novel Subtype of Serous Ovarian Cancer

od Bentink, Stefan, Haibe-Kains, Benjamin, Risch, Thomas, Fan, Jian-Bing, Hirsch, Michelle S., Holton, Kristina, Rubio, Renee, April, Craig, Chen, Jing, Wickham-Garcia, Eliza, Liu, Joyce, Culhane, Aedin, Drapkin, Ronny, Quackenbush, John, Matulonis, Ursula A.
Izdano 2012

Clinical and Molecular Analysis of Pathologic Fracture-associated Osteosarcoma: MicroRNA profile Is Different and Correlates with Prognosis

od Lozano Calderón, Santiago A., Garbutt, Cassandra, Kim, Jason, Lietz, Christopher E., Chen, Yen-Lin, Bernstein, Karen, Chebib, Ivan, Nielsen, G. Petur, Deshpande, Vikram, Rubio, Renee, Wang, Yaoyu E., Quackenbush, John, Delaney, Thomas, Raskin, Kevin, Schwab, Joseph, Cote, Gregory, Spentzos, Dimitrios
Izdano u Clin Orthop Relat Res (2019)

Therapeutic Implications of GIPC1 Silencing in Cancer

od Chittenden, Thomas W., Pak, Jane, Rubio, Renee, Cheng, Hailing, Holton, Kristina, Prendergast, Niall, Glinskii, Vladimir, Cai, Yi, Culhane, Aedin, Bentink, Stefan, Schwede, Mathew, Mar, Jessica C., Howe, Eleanor A., Aryee, Martin, Sultana, Razvan, Lanahan, Anthony A., Taylor, Jennifer M., Holmes, Chris, Hahn, William C., Zhao, Jean J., Iglehart, J. Dirk, Quackenbush, John
Izdano 2010

Gender-Specific Molecular and Clinical Features underlie Malignant Pleural Mesothelioma

od Rienzo, Assunta De, Archer, Michael A., Yeap, Beow Y., Dao, Nhien, Sciaranghella, Daniele, Sideris, Antonios C., Zheng, Yifan, Holman, Alexander G., Wang, Yaoyu E., Dal Cin, Paola S., Fletcher, Jonathan A., Rubio, Renee, Croft, Larry, Quackenbush, John, Sugarbaker, Peter E., Munir, Kiara J., Battilana, Jesse R., Gustafson, Corinne E., Chirieac, Lucian R., Ching, Soo Meng, Wong, James, Tay, Liang Chung, Rudd, Stephen, Hercus, Robert, Sugarbaker, David J., Richards, William G., Bueno, Raphael
Izdano u Cancer Res (2015)

Viral Perturbations of Host Networks Reflect Disease Etiology

od Gulbahce, Natali, Yan, Han, Dricot, Amélie, Padi, Megha, Byrdsong, Danielle, Franchi, Rachel, Lee, Deok-Sun, Rozenblatt-Rosen, Orit, Mar, Jessica C., Calderwood, Michael A., Baldwin, Amy, Zhao, Bo, Santhanam, Balaji, Braun, Pascal, Simonis, Nicolas, Huh, Kyung-Won, Hellner, Karin, Grace, Miranda, Chen, Alyce, Rubio, Renee, Marto, Jarrod A., Christakis, Nicholas A., Kieff, Elliott, Roth, Frederick P., Roecklein-Canfield, Jennifer, DeCaprio, James A., Cusick, Michael E., Quackenbush, John, Hill, David E., Münger, Karl, Vidal, Marc, Barabási, Albert-László
Izdano 2012

Meeting report: discussions and preliminary findings on extracellular RNA measurement methods from laboratories in the NIH Extracellular RNA Communication Consortium

od Laurent, Louise C., Abdel-Mageed, Asim B., Adelson, P. David, Arango, Jorge, Balaj, Leonora, Breakefield, Xandra, Carlson, Elizabeth, Carter, Bob S., Majem, Blanca, Chen, Clark C., Cocucci, Emanuele, Danielson, Kirsty, Courtright, Amanda, Das, Saumya, Elmageed, Zakaria Y. Abd, Enderle, Daniel, Ezrin, Alan, Ferrer, Marc, Freedman, Jane, Galas, David, Gandhi, Roopali, Huentelman, Matthew J., Van Keuren-Jensen, Kendall, Kalani, Yashar, Kim, Yong, Krichevsky, Anna M., Lai, Charles, Lal-Nag, Madhu, Laurent, Clara D., Leonardo, Trevor, Li, Feng, Malenica, Ivana, Mondal, Debasis, Nejad, Parham, Patel, Tushar, Raffai, Robert L., Rubio, Renee, Skog, Johan, Spetzler, Robert, Sun, Jie, Tanriverdi, Kahraman, Vickers, Kasey, Wang, Liang, Wang, Yaoyu, Wei, Zhiyun, Weiner, Howard L., Wong, David, Yan, Irene K., Yeri, Ashish, Gould, Stephen
Izdano u J Extracell Vesicles (2015)