Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2

le Mick, Eran, Kamm, Jack, Pisco, Angela Oliveira, Ratnasiri, Kalani, Babik, Jennifer M., Calfee, Carolyn S., Castañeda, Gloria, DeRisi, Joseph L., Detweiler, Angela M., Hao, Samantha, Kangelaris, Kirsten N., Kumar, G. Renuka, Li, Lucy M., Mann, Sabrina A., Neff, Norma, Prasad, Priya A., Serpa, Paula Hayakawa, Shah, Sachin J., Spottiswoode, Natasha, Tan, Michelle, Christenson, Stephanie A., Kistler, Amy, Langelier, Charles
Foilsithe in medRxiv (2020)

ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens

le Zamecnik, Colin R., Rajan, Jayant V., Yamauchi, Kevin A., Mann, Sabrina A., Loudermilk, Rita P., Sowa, Gavin M., Zorn, Kelsey C., Alvarenga, Bonny D., Gaebler, Christian, Caskey, Marina, Stone, Mars, Norris, Philip J., Gu, Wei, Chiu, Charles Y., Ng, Dianna, Byrnes, James R., Zhou, Xin X., Wells, James A., Robbiani, Davide F., Nussenzweig, Michel C., DeRisi, Joseph L., Wilson, Michael R.
Foilsithe in Cell Rep Med (2020)

Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses

le Mick, Eran, Kamm, Jack, Pisco, Angela Oliveira, Ratnasiri, Kalani, Babik, Jennifer M., Castañeda, Gloria, DeRisi, Joseph L., Detweiler, Angela M., Hao, Samantha L., Kangelaris, Kirsten N., Kumar, G. Renuka, Li, Lucy M., Mann, Sabrina A., Neff, Norma, Prasad, Priya A., Serpa, Paula Hayakawa, Shah, Sachin J., Spottiswoode, Natasha, Tan, Michelle, Calfee, Carolyn S., Christenson, Stephanie A., Kistler, Amy, Langelier, Charles
Foilsithe in Nat Commun (2020)

Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR

le Vanaerschot, Manu, Mann, Sabrina A., Webber, James T., Kamm, Jack, Bell, Sidney M., Bell, John, Hong, Si Noon, Nguyen, Minh Phuong, Chan, Lienna Y., Bhatt, Karan D., Tan, Michelle, Detweiler, Angela M., Espinosa, Alex, Wu, Wesley, Batson, Joshua, Dynerman, David, Wadford, Debra A., Puschnik, Andreas S., Neff, Norma, Ahyong, Vida, Miller, Steve, Ayscue, Patrick, Tato, Cristina M., Paul, Simon, Kistler, Amy L., DeRisi, Joseph L., Crawford, Emily D.
Foilsithe in J Clin Microbiol (2020)

Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco

le Peng, James, Mann, Sabrina A, Mitchell, Anthea M, Liu, Jamin, Laurie, Matthew T., Sunshine, Sara, Pilarowski, Genay, Ayscue, Patrick, Kistler, Amy, Vanaerschot, Manu, Li, Lucy M., McGeever, Aaron, Chow, Eric D., Team, IDseq, Marquez, Carina, Nakamura, Robert, Rubio, Luis, Chamie, Gabriel, Jones, Diane, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Tulier-Laiwa, Valerie, Black, Douglas, Martinez, Jackie, Naso, Jamie, Schwab, Joshua, Petersen, Maya, Havlir, Diane, DeRisi, Joseph
Foilsithe in medRxiv (2021)

Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a...

le Peng, James, Liu, Jamin, Mann, Sabrina A, Mitchell, Anthea M, Laurie, Matthew T, Sunshine, Sara, Pilarowski, Genay, Ayscue, Patrick, Kistler, Amy, Vanaerschot, Manu, Li, Lucy M, McGeever, Aaron, Chow, Eric D, Marquez, Carina, Nakamura, Robert, Rubio, Luis, Chamie, Gabriel, Jones, Diane, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Tulier-Laiwa, Valerie, Black, Douglas, Martinez, Jackie, Naso, Jamie, Schwab, Joshua, Petersen, Maya, Havlir, Diane, DeRisi, Joseph
Foilsithe in Clin Infect Dis (2021)

Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19

le Shah, Sachin J., Barish, Peter N., Prasad, Priya A., Kistler, Amy, Neff, Norma, Kamm, Jack, Li, Lucy M., Chiu, Charles Y., Babik, Jennifer M., Fang, Margaret C., Abe-Jones, Yumiko, Alipanah, Narges, Alvarez, Francisco N., Botvinnik, Olga Borisovna, Castaneda, Gloria, Dadasovich, Rand M., Davis, Jennifer, Deng, Xianding, DeRisi, Joseph L., Detweiler, Angela M., Federman, Scot, Haliburton, John, Hao, Samantha, Kerkhoff, Andrew D., Kumar, G. Renuka, Malcolm, Katherine B., Mann, Sabrina A., Martinez, Sandra, Mary, Rupa K., Mick, Eran, Mwakibete, Lusajo, Najafi, Nader, Peluso, Michael J., Phelps, Maira, Pisco, Angela Oliveira, Ratnasiri, Kalani, Rubio, Luis A., Sellas, Anna, Sherwood, Kyla D., Sheu, Jonathan, Spottiswoode, Natasha, Tan, Michelle, Yu, Guixia, Kangelaris, Kirsten Neudoerffer, Langelier, Charles
Foilsithe in EClinicalMedicine (2020)

Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19: Anti-IFN antibodies in critical COVID...

le van der Wijst, Monique G.P., Vazquez, Sara E., Hartoularos, George C., Bastard, Paul, Grant, Tianna, Bueno, Raymund, Lee, David S., Greenland, John R., Sun, Yang, Perez, Richard, Ogorodnikov, Anton, Ward, Alyssa, Mann, Sabrina A., Lynch, Kara L., Yun, Cassandra, Havlir, Diane V., Chamie, Gabriel, Marquez, Carina, Greenhouse, Bryan, Lionakis, Michail S., Norris, Philip J., Dumont, Larry J., Kelly, Kathleen, Zhang, Peng, Zhang, Qian, Gervais, Adrian, Le Voyer, Tom, Whatley, Alexander, Si, Yichen, Byrne, Ashley, Combes, Alexis J., Rao, Arjun Arkal, Song, Yun S., Fragiadakis, Gabriela K., Kangelaris, Kirsten, Calfee, Carolyn S., Erle, David J., Hendrickson, Carolyn, Krummel, Matthew F., Woodruff, Prescott G., Langelier, Charles R., Casanova, Jean-Laurent, Derisi, Joseph L., Anderson, Mark S., Ye, Chun Jimmie
Foilsithe in bioRxiv (2021)