Integration of tumor genomic data with cell lines using multi-dimensional network modules improves cancer pharmacogenomics

nork Webber, James T., Kaushik, Swati, Bandyopadhyay, Sourav
Argitaratua izan da Cell Syst (2018)

mzResults: An Interactive Viewer for Interrogation and Distribution of Proteomics Results

nork Webber, James T., Askenazi, Manor, Marto, Jarrod A.
Argitaratua 2011

mzServer: Web-based Programmatic Access for Mass Spectrometry Data Analysis

nork Askenazi, Manor, Webber, James T., Marto, Jarrod A.
Argitaratua 2011

Separation and Characterization of Respirable Amphibole Fibers from Libby, Montana

nork Webber, James S., Blake, David J., Ward, Tony J., Pfau, Jean C.
Argitaratua 2008

A Nanoflow Low Pressure High Peak Capacity Single Dimension LC MS/MS Platform for High throughput In Depth Analysis of Mammalian Proteomes

nork Zhou, Feng, Lu, Yu, Ficarro, Scott B., Webber, James T., Marto, Jarrod A.
Argitaratua 2012

An Online Nanoflow RP-SAX-RP LC-MS/MS Platform for Efficient and In-depth Proteome Sequence Analysis of Complex Organisms

nork Zhou, Feng, Sikorski, Timothy W., Ficarro, Scott B., Webber, James T., Marto, Jarrod A.
Argitaratua 2011

Library Dependent LC-MS/MS Acquisition via mzAPI/Live

nork Webber, James T., Askenazi, Manor, Ficarro, Scott B., Iglehart, Max A., Marto, Jarrod A.
Argitaratua 2013

Fate of Libby Amphibole Fibers When Burning Contaminated Firewood

nork Ward, Tony J., Hart, Julie F., Spear, Terry M., Meyer, Brienne J., Webber, James S.
Argitaratua 2009

An Optimized Chromatographic Strategy for Multiplexing In Parallel Reaction Monitoring Mass Spectrometry: Insights from Quantitation of Activated Kinases

nork Urisman, Anatoly, Levin, Rebecca S., Gordan, John D., Webber, James T., Hernandez, Hilda, Ishihama, Yasushi, Shokat, Kevan M., Burlingame, Alma L.
Argitaratua izan da Mol Cell Proteomics (2017)

multiplierz: an extensible API based desktop environment for proteomics data analysis

nork Parikh, Jignesh R, Askenazi, Manor, Ficarro, Scott B, Cashorali, Tanya, Webber, James T, Blank, Nathaniel C, Zhang, Yi, Marto, Jarrod A
Argitaratua 2009

Online Nanoflow Multidimensional Fractionation for High Efficiency Phosphopeptide Analysis

nork Ficarro, Scott B., Zhang, Yi, Carrasco-Alfonso, Marlene J., Garg, Brijesh, Adelmant, Guillaume, Webber, James T., Luckey, C. John, Marto, Jarrod A.
Argitaratua 2011

C/EBPα and DEK coordinately regulate myeloid differentiation

nork Koleva, Rositsa I., Ficarro, Scott B., Radomska, Hanna S., Carrasco-Alfonso, Marlene J., Alberta, John A., Webber, James T., Luckey, C. John, Marcucci, Guido, Tenen, Daniel G., Marto, Jarrod A.
Argitaratua 2012

Kinome rewiring reveals AURKA limits PI3K-pathway inhibitor efficacy in breast cancer

nork Donnella, Hayley J, Webber, James T, Levin, Rebecca S, Camarda, Roman, Momcilovic, Olga, Bayani, Nora, Shah, Khyati N, Korkola, James, Shokat, Kevan M, Goga, Andrei, Gordan, John D, Bandyopadhyay, Sourav
Argitaratua izan da Nat Chem Biol (2018)

Oncogene Mimicry as a Mechanism of Primary Resistance to BRAF Inhibitors

nork Sos, Martin L., Levin, Rebecca S., Gordan, John D., Oses-Prieto, Juan A., Webber, James T., Salt, Megan, Hann, Byron, Burlingame, Alma L., McCormick, Frank, Bandyopadhyay, Sourav, Shokat, Kevan M.
Argitaratua izan da Cell Rep (2014)

Aging hallmarks exhibit organ-specific temporal signatures

nork Schaum, Nicholas, Lehallier, Benoit, Hahn, Oliver, Pálovics, Róbert, Hosseinzadeh, Shayan, Lee, Song E., Sit, Rene, Lee, Davis P., Losada, Patricia Morán, Zardeneta, Macy E., Fehlmann, Tobias, Webber, James, McGeever, Aaron, Calcuttawala, Kruti, Zhang, Hui, Berdnik, Daniela, Mathur, Vidhu, Tan, Weilun, Zee, Alexander, Tan, Michelle, Pisco, Angela, Karkanias, Jim, Neff, Norma F., Keller, Andreas, Darmanis, Spyros, Quake, Stephen R., Wyss-Coray, Tony
Argitaratua izan da Nature (2020)

UNBIASED PROTEOMIC PROFILING UNCOVERS A TARGETABLE GNAS/PKA/PP2A AXIS IN SMALL CELL LUNG CANCER STEM CELLS

nork Coles, Garry L., Cristea, Sandra, Webber, James T., Levin, Rebecca S., Moss, Steven M., He, Andy, Sangodkar, Jaya, Hwang, Yeonjoo C., Arand, Julia, Drainas, Alexandros P., Mooney, Nancie A., Demeter, Janos, Spradlin, Jessica N., Mauch, Brandon, Le, Vicky, Shue, Yan Ting, Ko, Julie H., Lee, Myung Chang, Kong, Christina, Nomura, Daniel K., Ohlmeyer, Michael, Swaney, Danielle L., Jackson, Peter K., Narla, Goutham, Gordan, John D., Shokat, Kevan, Sage, Julien
Argitaratua izan da Cancer Cell (2020)

Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR

nork Vanaerschot, Manu, Mann, Sabrina A., Webber, James T., Kamm, Jack, Bell, Sidney M., Bell, John, Hong, Si Noon, Nguyen, Minh Phuong, Chan, Lienna Y., Bhatt, Karan D., Tan, Michelle, Detweiler, Angela M., Espinosa, Alex, Wu, Wesley, Batson, Joshua, Dynerman, David, Wadford, Debra A., Puschnik, Andreas S., Neff, Norma, Ahyong, Vida, Miller, Steve, Ayscue, Patrick, Tato, Cristina M., Paul, Simon, Kistler, Amy L., DeRisi, Joseph L., Crawford, Emily D.
Argitaratua izan da J Clin Microbiol (2020)

Isocitrate dehydrogenase mutations confer dasatinib hypersensitivity and SRC-dependence in intrahepatic cholangiocarcinoma

nork Saha, Supriya K., Gordan, John D., Kleinstiver, Benjamin P., Vu, Phuong, Najem, Mortada S., Yeo, Jia-Chi, Shi, Lei, Kato, Yasutaka, Levin, Rebecca S., Webber, James T., Damon, Leah J., Egan, Regina K., Greninger, Patricia, McDermott, Ultan, Garnett, Mathew J., Jenkins, Roger L., Rieger-Christ, Kimberly M., Sullivan, Travis B., Hezel, Aram F., Liss, Andrew S., Mizukami, Yusuke, Goyal, Lipika, Ferrone, Cristina R., Zhu, Andrew X., Joung, J. Keith, Shokat, Kevan M., Benes, Cyril H., Bardeesy, Nabeel
Argitaratua izan da Cancer Discov (2016)

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

nork Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Argitaratua 2012

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris: The Tabula Muris Consortium

nork Schaum, Nicholas, Karkanias, Jim, Neff, Norma F., May, Andrew P., Quake, Stephen R., Wyss-Coray, Tony, Darmanis, Spyros, Batson, Joshua, Botvinnik, Olga, Chen, Michelle B., Chen, Steven, Green, Foad, Jones, Robert, Maynard, Ashley, Penland, Lolita, Pisco, Angela Oliveira, Sit, Rene V., Stanley, Geoffrey M., Webber, James T., Zanini, Fabio, Baghel, Ankit S, Bakerman, Isaac, Bansal, Ishita, Berdnik, Daniela, Bilen, Biter, Brownfield, Douglas, Cain, Corey, Chen, Michelle B., Chen, Steven, Cho, Min, Cirolia, Giana, Conley, Stephanie D., Darmanis, Spyros, Demers, Aaron, Demir, Kubilay, de Morree, Antoine, Divita, Tessa, du Bois, Haley, Dulgeroff, Laughing Bear Torrez, Ebadi, Hamid, Espinoza, F. Hernán, Fish, Matt, Gan, Qiang, George, Benson M., Gillich, Astrid, Green, Foad, Genetiano, Geraldine, Gu, Xueying, Gulati, Gunsagar S., Hang, Yan, Hosseinzadeh, Shayan, Huang, Albin, Iram, Tal, Isobe, Taichi, Ives, Feather, Jones, Robert, Kao, Kevin S., Karnam, Guruswamy, Kershner, Aaron M., Kiss, Bernhard M., Kong, William, Kumar, Maya E., Lam, Jonathan, Lee, Davis P., Lee, Song E., Li, Guang, Li, Qingyun, Liu, Ling, Lo, Annie, Lu, Wan-Jin, Manjunath, Anoop, May, Andrew P., May, Kaia L., May, Oliver L., Maynard, Ashley, McKay, Marina, Metzger, Ross J., Mignardi, Marco, Min, Dullei, Nabhan, Ahmad N., Neff, Norma F., Ng, Katharine M., Noh, Joseph, Patkar, Rasika, Peng, Weng Chuan, Penland, Lolita, Puccinelli, Robert, Rulifson, Eric J., Schaum, Nicholas, Sikandar, Shaheen S., Sinha, Rahul, Sit, Rene V., Szade, Krzysztof, Tan, Weilun, Tato, Cristina, Tellez, Krissie, Travaglini, Kyle J., Tropini, Carolina, Waldburger, Lucas, van Weele, Linda J., Wosczyna, Michael N., Xiang, Jinyi, Xue, Soso, Youngyunpipatkul, Justin, Zanini, Fabio, Zardeneta, Macy E., Zhang, Fan, Zhou, Lu, Bansal, Ishita, Chen, Steven, Cho, Min, Cirolia, Giana, Darmanis, Spyros, Demers, Aaron, Divita, Tessa, Ebadi, Hamid, Genetiano, Geraldine, Green, Foad, Hosseinzadeh, Shayan, Ives, Feather, Lo, Annie, May, Andrew P., Maynard, Ashley, McKay, Marina, Neff, Norma F., Penland, Lolita, Sit, Rene V., Tan, Weilun, Waldburger, Lucas, oungyunpipatkul, Justin Y, Batson, Joshua, Botvinnik, Olga, Castro, Paola, Croote, Derek, Darmanis, Spyros, DeRisi, Joseph L., Karkanias, Jim, Pisco, Angela Oliveira, Stanley, Geoffrey M., Webber, James T., Zanini, Fabio, Baghel, Ankit S., Bakerman, Isaac, Batson, Joshua, Bilen, Biter, Botvinnik, Olga, Brownfield, Douglas, Chen, Michelle B., Darmanis, Spyros, Demir, Kubilay, de Morree, Antoine, Ebadi, Hamid, Espinoza, F. Hernán, Fish, Matt, Gan, Qiang, George, Benson M., Gillich, Astrid, Gu, Xueying, Gulati, Gunsagar S., Hang, Yan, Huang, Albin, Iram, Tal, Isobe, Taichi, Karnam, Guruswamy, Kershner, Aaron M., Kiss, Bernhard M., Kong, William, Kuo, Christin S., Lam, Jonathan, Lehallier, Benoit, Li, Guang, Li, Qingyun, Liu, Ling, Lu, Wan-Jin, Min, Dullei, Nabhan, Ahmad N., Ng, Katharine M., Nguyen, Patricia K., Patkar, Rasika, Peng, Weng Chuan, Penland, Lolita, Rulifson, Eric J., Schaum, Nicholas, Sikandar, Shaheen S., Sinha, Rahul, Szade, Krzysztof, Tan, Serena Y., Tellez, Krissie, Travaglini, Kyle J., Tropini, Carolina, van Weele, Linda J., Wang, Bruce M., Wosczyna, Michael N., Xiang, Jinyi, Yousef, Hanadie, Zhou, Lu, Batson, Joshua, Botvinnik, Olga, Chen, Steven, Darmanis, Spyros, Green, Foad, May, Andrew P., Maynard, Ashley, Pisco, Angela Oliveira, Quake, Stephen R., Schaum, Nicholas, Stanley, Geoffrey M., Webber, James T., Wyss-Coray, Tony, Zanini, Fabio, Beachy, Philip A., Chan, Charles K. F., de Morree, Antoine, George, Benson M., Gulati, Gunsagar S., Hang, Yan, Huang, Kerwyn Casey, Iram, Tal, Isobe, Taichi, Kershner, Aaron M., Kiss, Bernhard M., Kong, William, Li, Guang, Li, Qingyun, Liu, Ling, Lu, Wan-Jin, Nabhan, Ahmad N., Ng, Katharine M., Nguyen, Patricia K., Peng, Weng Chuan, Rulifson, Eric J., Schaum, Nicholas, Sikandar, Shaheen S., Sinha, Rahul, Szade, Krzysztof, Travaglini, Kyle J., Tropini, Carolina, Wang, Bruce M., Weinberg, Kenneth, Wosczyna, Michael N., Wu, Sean M., Yousef, Hanadie, Barres, Ben A., Beachy, Philip A., Chan, Charles K. F., Clarke, Michael F., Darmanis, Spyros, Huang, Kerwyn Casey, Karkanias, Jim, Kim, Seung K., Krasnow, Mark A., Kumar, Maya E., Kuo, Christin S., May, Andrew P., Metzger, Ross J., Neff, Norma F., Nusse, Roel, Nguyen, Patricia K., Rando, Thomas A., Sonnenburg, Justin, Wang, Bruce M., Weinberg, Kenneth, Weissman, Irving L., Wu, Sean M., Quake, Stephen R., Wyss-Coray, Tony
Argitaratua izan da Nature (2018)