How Next-Generation Sequencing and Multiscale Data Analysis Will Transform Infectious Disease Management

door Pak, Theodore R., Kasarskis, Andrew
Gepubliceerd in Clin Infect Dis (2015)

ChromoZoom: a flexible, fluid, web-based genome browser

door Pak, Theodore R., Roth, Frederick P.
Gepubliceerd in 2013

Estimating local costs associated with Clostridium difficile infection using machine learning and electronic medical records

door Pak, Theodore R., Chacko, Kieran, O’Donnell, Timothy, Huprikar, Shirish, van Bakel, Harm, Kasarskis, Andrew, Scott, Erick R.
Gepubliceerd in Infect Control Hosp Epidemiol (2017)

Genetic Basis of Emerging Vancomycin, Linezolid, and Daptomycin Heteroresistance in a Case of Persistent Enterococcus faecium Bacteremia

door Chacko, Kieran I., Sullivan, Mitchell J., Beckford, Colleen, Altman, Deena R., Ciferri, Brianne, Pak, Theodore R., Sebra, Robert, Kasarskis, Andrew, Hamula, Camille L., van Bakel, Harm
Gepubliceerd in Antimicrob Agents Chemother (2018)

High-dimensional CyTOF analysis of dengue virus–infected human DCs reveals distinct viral signatures

door Hamlin, Rebecca E., Rahman, Adeeb, Pak, Theodore R., Maringer, Kevin, Mena, Ignacio, Bernal-Rubio, Dabeiba, Potla, Uma, Maestre, Ana M., Fredericks, Anthony C., Amir, El-ad D., Kasarskis, Andrew, Ramos, Irene, Merad, Miriam, Fernandez-Sesma, Ana
Gepubliceerd in JCI Insight (2017)

Whole-Genome Sequencing Identifies Emergence of a Quinolone Resistance Mutation in a Case of Stenotrophomonas maltophilia Bacteremia

door Pak, Theodore R., Altman, Deena R., Attie, Oliver, Sebra, Robert, Hamula, Camille L., Lewis, Martha, Deikus, Gintaras, Newman, Leah C., Fang, Gang, Hand, Jonathan, Patel, Gopi, Wallach, Fran, Schadt, Eric E., Huprikar, Shirish, van Bakel, Harm, Kasarskis, Andrew, Bashir, Ali
Gepubliceerd in Antimicrob Agents Chemother (2015)

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases

door Michlmayr, Daniela, Pak, Theodore R, Rahman, Adeeb H, Amir, El‐Ad David, Kim, Eun‐Young, Kim‐Schulze, Seunghee, Suprun, Maria, Stewart, Michael G, Thomas, Guajira P, Balmaseda, Angel, Wang, Li, Zhu, Jun, Suaréz‐Fariñas, Mayte, Wolinsky, Steven M, Kasarskis, Andrew, Harris, Eva
Gepubliceerd in Mol Syst Biol (2018)

PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks

door Berbel Caban, Ana, Pak, Theodore R., Obla, Ajay, Dupper, Amy C., Chacko, Kieran I., Fox, Lindsey, Mills, Alexandra, Ciferri, Brianne, Oussenko, Irina, Beckford, Colleen, Chung, Marilyn, Sebra, Robert, Smith, Melissa, Conolly, Sarah, Patel, Gopi, Kasarskis, Andrew, Sullivan, Mitchell J., Altman, Deena R., van Bakel, Harm
Gepubliceerd in Genome Med (2020)

Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection

door Altman, Deena R., Sullivan, Mitchell J., Chacko, Kieran I., Balasubramanian, Divya, Pak, Theodore R., Sause, William E., Kumar, Krishan, Sebra, Robert, Deikus, Gintaras, Attie, Oliver, Rose, Hannah, Lewis, Martha, Fulmer, Yi, Bashir, Ali, Kasarskis, Andrew, Schadt, Eric E., Richardson, Anthony R., Torres, Victor J., Shopsin, Bo, van Bakel, Harm
Gepubliceerd in Infect Immun (2018)

A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbrea...

door Sullivan, Mitchell J., Altman, Deena R., Chacko, Kieran I., Ciferri, Brianne, Webster, Elizabeth, Pak, Theodore R., Deikus, Gintaras, Lewis-Sandari, Martha, Khan, Zenab, Beckford, Colleen, Rendo, Angela, Samaroo, Flora, Sebra, Robert, Karam-Howlin, Ramona, Dingle, Tanis, Hamula, Camille, Bashir, Ali, Schadt, Eric, Patel, Gopi, Wallach, Frances, Kasarskis, Andrew, Gibbs, Kathleen, van Bakel, Harm
Gepubliceerd in J Clin Microbiol (2019)

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

door Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Gepubliceerd in 2012