Siri of the Cell: What Biology Could Learn from the iPhone

von Carvunis, Anne-Ruxandra, Ideker, Trey
Veröffentlicht 2014

Of mice, men and immunity: a case for evolutionary systems biology

von Ernst, Peter B., Carvunis, Anne-Ruxandra
Veröffentlicht in Nat Immunol (2018)

De novo gene birth

von Van Oss, Stephen Branden, Carvunis, Anne-Ruxandra
Veröffentlicht in PLoS Genet (2019)

Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes

von Vakirlis, Nikolaos, Carvunis, Anne-Ruxandra, McLysaght, Aoife
Veröffentlicht in eLife (2020)

LI Detector: a framework for sensitive colony-based screens regardless of the distribution of fitness effects

von Parikh, Saurin Bipin, Castilho Coelho, Nelson, Carvunis, Anne-Ruxandra
Veröffentlicht in G3 (Bethesda) (2021)

Integrative approaches for finding modular structure in biological networks

von Mitra, Koyel, Carvunis, Anne-Ruxandra, Ramesh, Sanath Kumar, Ideker, Trey
Veröffentlicht 2013

The meanings of 'function' in biology and the problematic case of de novo gene emergence

von Keeling, Diane Marie, Garza, Patricia, Nartey, Charisse Michelle, Carvunis, Anne-Ruxandra
Veröffentlicht in eLife (2019)

The Recalcitrance and Resilience of Scientific Function

von Keeling, Diane Marie, Garza, Patricia, Nartey, Charisse Michelle, Carvunis, Anne-Ruxandra
Veröffentlicht in Poroi (2020)

Evidence for a common evolutionary rate in metazoan transcriptional networks

von Carvunis, Anne-Ruxandra, Wang, Tina, Skola, Dylan, Yu, Alice, Chen, Jonathan, Kreisberg, Jason F, Ideker, Trey
Veröffentlicht in eLife (2015)

Genome-Wide Identification of Pseudomonas aeruginosa Virulence-Related Genes Using a Caenorhabditis elegans Infection Model

von Feinbaum, Rhonda L., Urbach, Jonathan M., Liberati, Nicole T., Djonovic, Slavica, Adonizio, Allison, Carvunis, Anne-Ruxandra, Ausubel, Frederick M.
Veröffentlicht 2012

No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution

von Domazet-Lošo, Tomislav, Carvunis, Anne-Ruxandra, Albà, M. Mar, Šestak, Martin Sebastijan, Bakarić, Robert, Neme, Rafik, Tautz, Diethard
Veröffentlicht in Mol Biol Evol (2017)

Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome

von Wang, Tina, Ma, Jianzhu, Hogan, Andrew N., Fong, Samson, Licon, Katherine, Tsui, Brian, Kreisberg, Jason F., Adams, Peter D., Carvunis, Anne-Ruxandra, Bannasch, Danika L., Ostrander, Elaine A., Ideker, Trey
Veröffentlicht in Cell Syst (2020)

A UV–Induced Genetic Network Links the RSC Complex to Nucleotide Excision Repair and Shows Dose-Dependent Rewiring

von Srivas, Rohith, Costelloe, Thomas, Carvunis, Anne-Ruxandra, Sarkar, Sovan, Malta, Erik, Sun, Su Ming, Pool, Marijke, Licon, Katherine, van Welsem, Tibor, van Leeuwen, Fred, McHugh, Peter J., van Attikum, Haico, Ideker, Trey
Veröffentlicht 2013

Literature-curated protein interaction datasets

von Cusick, Michael E, Yu, Haiyuan, Smolyar, Alex, Venkatesan, Kavitha, Carvunis, Anne-Ruxandra, Simonis, Nicolas, Rual, Jean-François, Borick, Heather, Braun, Pascal, Dreze, Matija, Galli, Mary, Yazaki, Junshi, Hill, David E, Ecker, Joseph R, Roth, Frederick P, Vidal, Marc
Veröffentlicht 2009

Revisiting the Saccharomyces cerevisiae predicted ORFeome

von Li, Qian-Ru, Carvunis, Anne-Ruxandra, Yu, Haiyuan, Han, Jing-Dong J., Zhong, Quan, Simonis, Nicolas, Tam, Stanley, Hao, Tong, Klitgord, Niels J., Dupuy, Denis, Mou, Danny, Wapinski, Ilan, Regev, Aviv, Hill, David E., Cusick, Michael E., Vidal, Marc
Veröffentlicht 2008

Proto-genes and de novo gene birth

von Carvunis, Anne-Ruxandra, Rolland, Thomas, Wapinski, Ilan, Calderwood, Michael A., Yildirim, Muhammed A., Simonis, Nicolas, Charloteaux, Benoit, Hidalgo, César A., Barbette, Justin, Santhanam, Balaji, Brar, Gloria A., Weissman, Jonathan S., Regev, Aviv, Thierry-Mieg, Nicolas, Cusick, Michael E., Vidal, Marc
Veröffentlicht 2012

De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

von Vakirlis, Nikolaos, Acar, Omer, Hsu, Brian, Castilho Coelho, Nelson, Van Oss, S. Branden, Wacholder, Aaron, Medetgul-Ernar, Kate, Bowman, Ray W., Hines, Cameron P., Iannotta, John, Parikh, Saurin Bipin, McLysaght, Aoife, Camacho, Carlos J., O’Donnell, Allyson F., Ideker, Trey, Carvunis, Anne-Ruxandra
Veröffentlicht in Nat Commun (2020)

Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

von Vakirlis, Nikolaos, Acar, Omer, Hsu, Brian, Coelho, Nelson Castilho, Van Oss, S. Branden, Wacholder, Aaron, Medetgul-Ernar, Kate, Bowman, Ray W., Hines, Cameron P., Iannotta, John, Parikh, Saurin Bipin, McLysaght, Aoife, Camacho, Carlos J., O’Donnell, Allyson F., Ideker, Trey, Carvunis, Anne-Ruxandra
Veröffentlicht in Nat Commun (2021)

Mapping transcription factor interactome networks using HaloTag protein arrays

von Yazaki, Junshi, Galli, Mary, Kim, Alice Y., Nito, Kazumasa, Aleman, Fernando, Chang, Katherine N., Carvunis, Anne-Ruxandra, Quan, Rosa, Nguyen, Hien, Song, Liang, Alvarez, José M., Huang, Shao-shan Carol, Chen, Huaming, Ramachandran, Niroshan, Altmann, Stefan, Gutiérrez, Rodrigo A., Hill, David E., Schroeder, Julian I., Chory, Joanne, LaBaer, Joshua, Vidal, Marc, Braun, Pascal, Ecker, Joseph R.
Veröffentlicht in Proc Natl Acad Sci U S A (2016)

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network

von Mukhtar, M. Shahid, Carvunis, Anne-Ruxandra, Dreze, Matija, Epple, Petra, Steinbrenner, Jens, Moore, Jonathan, Tasan, Murat, Galli, Mary, Hao, Tong, Nishimura, Marc T., Pevzner, Samuel J., Donovan, Susan E., Ghamsari, Lila, Santhanam, Balaji, Romero, Viviana, Poulin, Matthew M., Gebreab, Fana, Gutierrez, Bryan J., Tam, Stanley, Monachello, Dario, Boxem, Mike, Harbort, Christopher J., McDonald, Nathan, Gai, Lantian, Chen, Huaming, He, Yijian, Vandenhaute, Jean, Roth, Frederick P., Hill, David E., Ecker, Joseph R., Vidal, Marc, Beynon, Jim, Braun, Pascal, Dangl, Jeffery L.
Veröffentlicht 2011