Siri of the Cell: What Biology Could Learn from the iPhone

por Carvunis, Anne-Ruxandra, Ideker, Trey
Publicado 2014

Of mice, men and immunity: a case for evolutionary systems biology

por Ernst, Peter B., Carvunis, Anne-Ruxandra
Publicado en Nat Immunol (2018)

De novo gene birth

por Van Oss, Stephen Branden, Carvunis, Anne-Ruxandra
Publicado en PLoS Genet (2019)

Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes

por Vakirlis, Nikolaos, Carvunis, Anne-Ruxandra, McLysaght, Aoife
Publicado en eLife (2020)

LI Detector: a framework for sensitive colony-based screens regardless of the distribution of fitness effects

por Parikh, Saurin Bipin, Castilho Coelho, Nelson, Carvunis, Anne-Ruxandra
Publicado en G3 (Bethesda) (2021)

Integrative approaches for finding modular structure in biological networks

por Mitra, Koyel, Carvunis, Anne-Ruxandra, Ramesh, Sanath Kumar, Ideker, Trey
Publicado 2013

The meanings of 'function' in biology and the problematic case of de novo gene emergence

por Keeling, Diane Marie, Garza, Patricia, Nartey, Charisse Michelle, Carvunis, Anne-Ruxandra
Publicado en eLife (2019)

The Recalcitrance and Resilience of Scientific Function

por Keeling, Diane Marie, Garza, Patricia, Nartey, Charisse Michelle, Carvunis, Anne-Ruxandra
Publicado en Poroi (2020)

Evidence for a common evolutionary rate in metazoan transcriptional networks

por Carvunis, Anne-Ruxandra, Wang, Tina, Skola, Dylan, Yu, Alice, Chen, Jonathan, Kreisberg, Jason F, Ideker, Trey
Publicado en eLife (2015)

Genome-Wide Identification of Pseudomonas aeruginosa Virulence-Related Genes Using a Caenorhabditis elegans Infection Model

por Feinbaum, Rhonda L., Urbach, Jonathan M., Liberati, Nicole T., Djonovic, Slavica, Adonizio, Allison, Carvunis, Anne-Ruxandra, Ausubel, Frederick M.
Publicado 2012

No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution

por Domazet-Lošo, Tomislav, Carvunis, Anne-Ruxandra, Albà, M. Mar, Šestak, Martin Sebastijan, Bakarić, Robert, Neme, Rafik, Tautz, Diethard
Publicado en Mol Biol Evol (2017)

Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome

por Wang, Tina, Ma, Jianzhu, Hogan, Andrew N., Fong, Samson, Licon, Katherine, Tsui, Brian, Kreisberg, Jason F., Adams, Peter D., Carvunis, Anne-Ruxandra, Bannasch, Danika L., Ostrander, Elaine A., Ideker, Trey
Publicado en Cell Syst (2020)

A UV–Induced Genetic Network Links the RSC Complex to Nucleotide Excision Repair and Shows Dose-Dependent Rewiring

por Srivas, Rohith, Costelloe, Thomas, Carvunis, Anne-Ruxandra, Sarkar, Sovan, Malta, Erik, Sun, Su Ming, Pool, Marijke, Licon, Katherine, van Welsem, Tibor, van Leeuwen, Fred, McHugh, Peter J., van Attikum, Haico, Ideker, Trey
Publicado 2013

Literature-curated protein interaction datasets

por Cusick, Michael E, Yu, Haiyuan, Smolyar, Alex, Venkatesan, Kavitha, Carvunis, Anne-Ruxandra, Simonis, Nicolas, Rual, Jean-François, Borick, Heather, Braun, Pascal, Dreze, Matija, Galli, Mary, Yazaki, Junshi, Hill, David E, Ecker, Joseph R, Roth, Frederick P, Vidal, Marc
Publicado 2009

Revisiting the Saccharomyces cerevisiae predicted ORFeome

por Li, Qian-Ru, Carvunis, Anne-Ruxandra, Yu, Haiyuan, Han, Jing-Dong J., Zhong, Quan, Simonis, Nicolas, Tam, Stanley, Hao, Tong, Klitgord, Niels J., Dupuy, Denis, Mou, Danny, Wapinski, Ilan, Regev, Aviv, Hill, David E., Cusick, Michael E., Vidal, Marc
Publicado 2008

Proto-genes and de novo gene birth

por Carvunis, Anne-Ruxandra, Rolland, Thomas, Wapinski, Ilan, Calderwood, Michael A., Yildirim, Muhammed A., Simonis, Nicolas, Charloteaux, Benoit, Hidalgo, César A., Barbette, Justin, Santhanam, Balaji, Brar, Gloria A., Weissman, Jonathan S., Regev, Aviv, Thierry-Mieg, Nicolas, Cusick, Michael E., Vidal, Marc
Publicado 2012

De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

por Vakirlis, Nikolaos, Acar, Omer, Hsu, Brian, Castilho Coelho, Nelson, Van Oss, S. Branden, Wacholder, Aaron, Medetgul-Ernar, Kate, Bowman, Ray W., Hines, Cameron P., Iannotta, John, Parikh, Saurin Bipin, McLysaght, Aoife, Camacho, Carlos J., O’Donnell, Allyson F., Ideker, Trey, Carvunis, Anne-Ruxandra
Publicado en Nat Commun (2020)

Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

por Vakirlis, Nikolaos, Acar, Omer, Hsu, Brian, Coelho, Nelson Castilho, Van Oss, S. Branden, Wacholder, Aaron, Medetgul-Ernar, Kate, Bowman, Ray W., Hines, Cameron P., Iannotta, John, Parikh, Saurin Bipin, McLysaght, Aoife, Camacho, Carlos J., O’Donnell, Allyson F., Ideker, Trey, Carvunis, Anne-Ruxandra
Publicado en Nat Commun (2021)

Mapping transcription factor interactome networks using HaloTag protein arrays

por Yazaki, Junshi, Galli, Mary, Kim, Alice Y., Nito, Kazumasa, Aleman, Fernando, Chang, Katherine N., Carvunis, Anne-Ruxandra, Quan, Rosa, Nguyen, Hien, Song, Liang, Alvarez, José M., Huang, Shao-shan Carol, Chen, Huaming, Ramachandran, Niroshan, Altmann, Stefan, Gutiérrez, Rodrigo A., Hill, David E., Schroeder, Julian I., Chory, Joanne, LaBaer, Joshua, Vidal, Marc, Braun, Pascal, Ecker, Joseph R.
Publicado en Proc Natl Acad Sci U S A (2016)

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network

por Mukhtar, M. Shahid, Carvunis, Anne-Ruxandra, Dreze, Matija, Epple, Petra, Steinbrenner, Jens, Moore, Jonathan, Tasan, Murat, Galli, Mary, Hao, Tong, Nishimura, Marc T., Pevzner, Samuel J., Donovan, Susan E., Ghamsari, Lila, Santhanam, Balaji, Romero, Viviana, Poulin, Matthew M., Gebreab, Fana, Gutierrez, Bryan J., Tam, Stanley, Monachello, Dario, Boxem, Mike, Harbort, Christopher J., McDonald, Nathan, Gai, Lantian, Chen, Huaming, He, Yijian, Vandenhaute, Jean, Roth, Frederick P., Hill, David E., Ecker, Joseph R., Vidal, Marc, Beynon, Jim, Braun, Pascal, Dangl, Jeffery L.
Publicado 2011