Siri of the Cell: What Biology Could Learn from the iPhone

od Carvunis, Anne-Ruxandra, Ideker, Trey
Izdano 2014

Of mice, men and immunity: a case for evolutionary systems biology

od Ernst, Peter B., Carvunis, Anne-Ruxandra
izdano v Nat Immunol (2018)

De novo gene birth

od Van Oss, Stephen Branden, Carvunis, Anne-Ruxandra
izdano v PLoS Genet (2019)

Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes

od Vakirlis, Nikolaos, Carvunis, Anne-Ruxandra, McLysaght, Aoife
izdano v eLife (2020)

LI Detector: a framework for sensitive colony-based screens regardless of the distribution of fitness effects

od Parikh, Saurin Bipin, Castilho Coelho, Nelson, Carvunis, Anne-Ruxandra
izdano v G3 (Bethesda) (2021)

Integrative approaches for finding modular structure in biological networks

od Mitra, Koyel, Carvunis, Anne-Ruxandra, Ramesh, Sanath Kumar, Ideker, Trey
Izdano 2013

The meanings of 'function' in biology and the problematic case of de novo gene emergence

od Keeling, Diane Marie, Garza, Patricia, Nartey, Charisse Michelle, Carvunis, Anne-Ruxandra
izdano v eLife (2019)

The Recalcitrance and Resilience of Scientific Function

od Keeling, Diane Marie, Garza, Patricia, Nartey, Charisse Michelle, Carvunis, Anne-Ruxandra
izdano v Poroi (2020)

Evidence for a common evolutionary rate in metazoan transcriptional networks

od Carvunis, Anne-Ruxandra, Wang, Tina, Skola, Dylan, Yu, Alice, Chen, Jonathan, Kreisberg, Jason F, Ideker, Trey
izdano v eLife (2015)

Genome-Wide Identification of Pseudomonas aeruginosa Virulence-Related Genes Using a Caenorhabditis elegans Infection Model

od Feinbaum, Rhonda L., Urbach, Jonathan M., Liberati, Nicole T., Djonovic, Slavica, Adonizio, Allison, Carvunis, Anne-Ruxandra, Ausubel, Frederick M.
Izdano 2012

No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution

od Domazet-Lošo, Tomislav, Carvunis, Anne-Ruxandra, Albà, M. Mar, Šestak, Martin Sebastijan, Bakarić, Robert, Neme, Rafik, Tautz, Diethard
izdano v Mol Biol Evol (2017)

Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome

od Wang, Tina, Ma, Jianzhu, Hogan, Andrew N., Fong, Samson, Licon, Katherine, Tsui, Brian, Kreisberg, Jason F., Adams, Peter D., Carvunis, Anne-Ruxandra, Bannasch, Danika L., Ostrander, Elaine A., Ideker, Trey
izdano v Cell Syst (2020)

A UV–Induced Genetic Network Links the RSC Complex to Nucleotide Excision Repair and Shows Dose-Dependent Rewiring

od Srivas, Rohith, Costelloe, Thomas, Carvunis, Anne-Ruxandra, Sarkar, Sovan, Malta, Erik, Sun, Su Ming, Pool, Marijke, Licon, Katherine, van Welsem, Tibor, van Leeuwen, Fred, McHugh, Peter J., van Attikum, Haico, Ideker, Trey
Izdano 2013

Literature-curated protein interaction datasets

od Cusick, Michael E, Yu, Haiyuan, Smolyar, Alex, Venkatesan, Kavitha, Carvunis, Anne-Ruxandra, Simonis, Nicolas, Rual, Jean-François, Borick, Heather, Braun, Pascal, Dreze, Matija, Galli, Mary, Yazaki, Junshi, Hill, David E, Ecker, Joseph R, Roth, Frederick P, Vidal, Marc
Izdano 2009

Revisiting the Saccharomyces cerevisiae predicted ORFeome

od Li, Qian-Ru, Carvunis, Anne-Ruxandra, Yu, Haiyuan, Han, Jing-Dong J., Zhong, Quan, Simonis, Nicolas, Tam, Stanley, Hao, Tong, Klitgord, Niels J., Dupuy, Denis, Mou, Danny, Wapinski, Ilan, Regev, Aviv, Hill, David E., Cusick, Michael E., Vidal, Marc
Izdano 2008

Proto-genes and de novo gene birth

od Carvunis, Anne-Ruxandra, Rolland, Thomas, Wapinski, Ilan, Calderwood, Michael A., Yildirim, Muhammed A., Simonis, Nicolas, Charloteaux, Benoit, Hidalgo, César A., Barbette, Justin, Santhanam, Balaji, Brar, Gloria A., Weissman, Jonathan S., Regev, Aviv, Thierry-Mieg, Nicolas, Cusick, Michael E., Vidal, Marc
Izdano 2012

De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

od Vakirlis, Nikolaos, Acar, Omer, Hsu, Brian, Castilho Coelho, Nelson, Van Oss, S. Branden, Wacholder, Aaron, Medetgul-Ernar, Kate, Bowman, Ray W., Hines, Cameron P., Iannotta, John, Parikh, Saurin Bipin, McLysaght, Aoife, Camacho, Carlos J., O’Donnell, Allyson F., Ideker, Trey, Carvunis, Anne-Ruxandra
izdano v Nat Commun (2020)

Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

od Vakirlis, Nikolaos, Acar, Omer, Hsu, Brian, Coelho, Nelson Castilho, Van Oss, S. Branden, Wacholder, Aaron, Medetgul-Ernar, Kate, Bowman, Ray W., Hines, Cameron P., Iannotta, John, Parikh, Saurin Bipin, McLysaght, Aoife, Camacho, Carlos J., O’Donnell, Allyson F., Ideker, Trey, Carvunis, Anne-Ruxandra
izdano v Nat Commun (2021)

Mapping transcription factor interactome networks using HaloTag protein arrays

od Yazaki, Junshi, Galli, Mary, Kim, Alice Y., Nito, Kazumasa, Aleman, Fernando, Chang, Katherine N., Carvunis, Anne-Ruxandra, Quan, Rosa, Nguyen, Hien, Song, Liang, Alvarez, José M., Huang, Shao-shan Carol, Chen, Huaming, Ramachandran, Niroshan, Altmann, Stefan, Gutiérrez, Rodrigo A., Hill, David E., Schroeder, Julian I., Chory, Joanne, LaBaer, Joshua, Vidal, Marc, Braun, Pascal, Ecker, Joseph R.
izdano v Proc Natl Acad Sci U S A (2016)

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network

od Mukhtar, M. Shahid, Carvunis, Anne-Ruxandra, Dreze, Matija, Epple, Petra, Steinbrenner, Jens, Moore, Jonathan, Tasan, Murat, Galli, Mary, Hao, Tong, Nishimura, Marc T., Pevzner, Samuel J., Donovan, Susan E., Ghamsari, Lila, Santhanam, Balaji, Romero, Viviana, Poulin, Matthew M., Gebreab, Fana, Gutierrez, Bryan J., Tam, Stanley, Monachello, Dario, Boxem, Mike, Harbort, Christopher J., McDonald, Nathan, Gai, Lantian, Chen, Huaming, He, Yijian, Vandenhaute, Jean, Roth, Frederick P., Hill, David E., Ecker, Joseph R., Vidal, Marc, Beynon, Jim, Braun, Pascal, Dangl, Jeffery L.
Izdano 2011