Overdispersion of the Molecular Clock Varies Between Yeast, Drosophila and Mammals

od Bedford, Trevor, Wapinski, Ilan, Hartl, Daniel L.
Izdano 2008

A functional selection model explains evolutionary robustness despite plasticity in regulatory networks

od Habib, Naomi, Wapinski, Ilan, Margalit, Hanah, Regev, Aviv, Friedman, Nir
Izdano 2012

Gene duplication and the evolution of ribosomal protein gene regulation in yeast

od Wapinski, Ilan, Pfiffner, Jenna, French, Courtney, Socha, Amanda, Thompson, Dawn Anne, Regev, Aviv
Izdano 2010

Abundance-based Classifier for the Prediction of Mass Spectrometric Peptide Detectability Upon Enrichment (PPA)

od Muntel, Jan, Boswell, Sarah A., Tang, Shaojun, Ahmed, Saima, Wapinski, Ilan, Foley, Greg, Steen, Hanno, Springer, Michael
Izdano u Mol Cell Proteomics (2015)

Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules

od Roy, Sushmita, Wapinski, Ilan, Pfiffner, Jenna, French, Courtney, Socha, Amanda, Konieczka, Jay, Habib, Naomi, Kellis, Manolis, Thompson, Dawn, Regev, Aviv
Izdano 2013

SynerClust: a highly scalable, synteny-aware orthologue clustering tool

od Georgescu, Christophe H., Manson, Abigail L., Griggs, Alexander D., Desjardins, Christopher A., Pironti, Alejandro, Wapinski, Ilan, Abeel, Thomas, Haas, Brian J., Earl, Ashlee M.
Izdano u Microb Genom (2018)

Evolutionary principles of modular gene regulation in yeasts

od Thompson, Dawn A, Roy, Sushmita, Chan, Michelle, Styczynsky, Mark P, Pfiffner, Jenna, French, Courtney, Socha, Amanda, Thielke, Anne, Napolitano, Sara, Muller, Paul, Kellis, Manolis, Konieczka, Jay H, Wapinski, Ilan, Regev, Aviv
Izdano 2013

Correction: Evolutionary principles of modular gene regulation in yeasts

od Thompson, Dawn A, Roy, Sushmita, Chan, Michelle, Styczynski, Mark P, Pfiffner, Jenna, French, Courtney, Socha, Amanda, Thielke, Anne, Napolitano, Sara, Muller, Paul, Kellis, Manolis, Konieczka, Jay H, Wapinski, Ilan, Regev, Aviv
Izdano 2013

Construction and Analysis of Two Genome-scale Deletion Libraries for Bacillus subtilis

od Koo, Byoung-Mo, Kritikos, George, Farelli, Jeremiah D., Todor, Horia, Tong, Kenneth, Kimsey, Harvey, Wapinski, Ilan, Galardini, Marco, Cabal, Angelo, Peters, Jason M., Hachmann, Anna-Barbara, Rudner, David Z., Allen, Karen N., Typas, Athanasios, Gross, Carol A.
Izdano u Cell Syst (2017)

Revisiting the Saccharomyces cerevisiae predicted ORFeome

od Li, Qian-Ru, Carvunis, Anne-Ruxandra, Yu, Haiyuan, Han, Jing-Dong J., Zhong, Quan, Simonis, Nicolas, Tam, Stanley, Hao, Tong, Klitgord, Niels J., Dupuy, Denis, Mou, Danny, Wapinski, Ilan, Regev, Aviv, Hill, David E., Cusick, Michael E., Vidal, Marc
Izdano 2008

Proto-genes and de novo gene birth

od Carvunis, Anne-Ruxandra, Rolland, Thomas, Wapinski, Ilan, Calderwood, Michael A., Yildirim, Muhammed A., Simonis, Nicolas, Charloteaux, Benoit, Hidalgo, César A., Barbette, Justin, Santhanam, Balaji, Brar, Gloria A., Weissman, Jonathan S., Regev, Aviv, Thierry-Mieg, Nicolas, Cusick, Michael E., Vidal, Marc
Izdano 2012

Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis

od McGuire, Abigail Manson, Weiner, Brian, Park, Sang Tae, Wapinski, Ilan, Raman, Sahadevan, Dolganov, Gregory, Peterson, Matthew, Riley, Robert, Zucker, Jeremy, Abeel, Thomas, White, Jared, Sisk, Peter, Stolte, Christian, Koehrsen, Mike, Yamamoto, Robert T, Iacobelli-Martinez, Milena, Kidd, Matthew J, Maer, Andreia M, Schoolnik, Gary K, Regev, Aviv, Galagan, James
Izdano 2012

Human-interpretable image features derived from densely mapped cancer pathology slides predict diverse molecular phenotypes

od Diao, James A., Wang, Jason K., Chui, Wan Fung, Mountain, Victoria, Gullapally, Sai Chowdary, Srinivasan, Ramprakash, Mitchell, Richard N., Glass, Benjamin, Hoffman, Sara, Rao, Sudha K., Maheshwari, Chirag, Lahiri, Abhik, Prakash, Aaditya, McLoughlin, Ryan, Kerner, Jennifer K., Resnick, Murray B., Montalto, Michael C., Khosla, Aditya, Wapinski, Ilan N., Beck, Andrew H., Elliott, Hunter L., Taylor-Weiner, Amaro
Izdano u Nat Commun (2021)

Comparative Functional Genomics of the Fission Yeasts

od Rhind, Nicholas, Chen, Zehua, Yassour, Moran, Thompson, Dawn A, Haas, Brian J, Habib, Naomi, Wapinski, Ilan, Roy, Sushmita, Lin, Michael F., Heiman, David I, Young, Sarah K, Furuya, Kanji, Guo, Yabin, Pidoux, Alison, Chen, Huei Mei, Robbertse, Barbara, Goldberg, Jonathan M., Aoki, Keita, Bayne, Elizabeth H., Berlin, Aaron M, Desjardins, Christopher A., Dobbs, Edward, Dukaj, Livio, Fan, Lin, FitzGerald, Michael G, French, Courtney, Gujja, Sharvari, Hansen, Klavs, Keifenheim, Dan, Levin, Joshua Z., Mosher, Rebecca A., Müller, Carolin A., Pfiffner, Jenna, Priest, Margaret, Russ, Carsten, Smialowska, Agata, Swoboda, Peter, Sykes, Sean M, Vaughn, Matthew, Vengrova, Sonya, Yoder, Ryan, Zeng, Qiandong, Allshire, Robin, Baulcombe, David, Birren, Bruce W., Brown, William, Ekwall, Karl, Kellis, Manolis, Leatherwood, Janet, Levin, Henry, Margalit, Hanah, Martienssen, Rob, Nieduszynski, Conrad A., Spatafora, Joseph W., Friedman, Nir, Dalgaard, Jacob Z., Baumann, Peter, Niki, Hironori, Regev, Aviv, Nusbaum, Chad
Izdano 2011

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

od Ma, Li-Jun, van der Does, H. Charlotte, Borkovich, Katherine A., Coleman, Jeffrey J., Daboussi, Marie-Josée, Di Pietro, Antonio, Dufresne, Marie, Freitag, Michael, Grabherr, Manfred, Henrissat, Bernard, Houterman, Petra M., Kang, Seogchan, Shim, Won-Bo, Woloshuk, Charles, Xie, Xiaohui, Xu, Jin-Rong, Antoniw, John, Baker, Scott E., Bluhm, Burton H., Breakspear, Andrew, Brown, Daren W., Butchko, Robert A. E., Chapman, Sinead, Coulson, Richard, Coutinho, Pedro M., Danchin, Etienne G. J., Diener, Andrew, Gale, Liane R., Gardiner, Donald M., Goff, Stephen, Hammond-Kosack, Kim E., Hilburn, Karen, Hua-Van, Aurélie, Jonkers, Wilfried, Kazan, Kemal, Kodira, Chinnappa D., Koehrsen, Michael, Kumar, Lokesh, Lee, Yong-Hwan, Li, Liande, Manners, John M., Miranda-Saavedra, Diego, Mukherjee, Mala, Park, Gyungsoon, Park, Jongsun, Park, Sook-Young, Proctor, Robert H., Regev, Aviv, Ruiz-Roldan, M. Carmen, Sain, Divya, Sakthikumar, Sharadha, Sykes, Sean, Schwartz, David C., Turgeon, B. Gillian, Wapinski, Ilan, Yoder, Olen, Young, Sarah, Zeng, Qiandong, Zhou, Shiguo, Galagan, James, Cuomo, Christina A., Kistler, H. Corby, Rep, Martijn
Izdano 2010