Broad-scale phylogenomics provides insights into retrovirus–host evolution

Por Hayward, Alexander, Grabherr, Manfred, Jern, Patric
Publicado em 2013

Interactions of Freshwater Cyanobacteria with Bacterial Antagonists

Por Osman, Omneya Ahmed, Beier, Sara, Grabherr, Manfred, Bertilsson, Stefan
Publicado no Appl Environ Microbiol (2017)

Modular and configurable optimal sequence alignment software: Cola

Por Zamani, Neda, Sundström, Görel, Höppner, Marc P, Grabherr, Manfred G
Publicado em 2014

Combinatorial identification of DNA methylation patterns over age in the human brain

Por Torabi Moghadam, Behrooz, Dabrowski, Michal, Kaminska, Bozena, Grabherr, Manfred G., Komorowski, Jan
Publicado no BMC Bioinformatics (2016)

Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues

Por Zaghlool, Ammar, Ameur, Adam, Nyberg, Linnea, Halvardson, Jonatan, Grabherr, Manfred, Cavelier, Lucia, Feuk, Lars
Publicado em 2013

Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum

Por Cuomo, Christina A., Untereiner, Wendy A., Ma, Li-Jun, Grabherr, Manfred, Birren, Bruce W.
Publicado no Genome Announc (2015)

Coordinated Changes in Gene Expression Throughout Encystation of Giardia intestinalis

Por Einarsson, Elin, Troell, Karin, Hoeppner, Marc P., Grabherr, Manfred, Ribacke, Ulf, Svärd, Staffan G.
Publicado no PLoS Negl Trop Dis (2016)

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

Por Grabherr, Manfred G., Russell, Pamela, Meyer, Miriah, Mauceli, Evan, Alföldi, Jessica, Di Palma, Federica, Lindblad-Toh, Kerstin
Publicado em 2010

Artificially designed promoters: Understanding the role of spatial features and canonical binding sites in transcription

Por Baumann, Martina, Höppner, Marc P., Meier, Michael, Pontiller, Jens, Ernst, Wolfgang, Grabherr, Reingard, Mauceli, Evan, Grabherr, Manfred G.
Publicado em 2012

A universal genomic coordinate translator for comparative genomics

Por Zamani, Neda, Sundström, Görel, Meadows, Jennifer RS, Höppner, Marc P, Dainat, Jacques, Lantz, Henrik, Haas, Brian J, Grabherr, Manfred G
Publicado em 2014

Unsupervised genome-wide recognition of local relationship patterns

Por Zamani, Neda, Russell, Pamela, Lantz, Henrik, Hoeppner, Marc P, Meadows, Jennifer RS, Vijay, Nagarjun, Mauceli, Evan, di Palma, Federica, Lindblad-Toh, Kerstin, Jern, Patric, Grabherr, Manfred G
Publicado em 2013

Exploiting Nucleotide Composition to Engineer Promoters

Por Grabherr, Manfred G., Pontiller, Jens, Mauceli, Evan, Ernst, Wolfgang, Baumann, Martina, Biagi, Tara, Swofford, Ross, Russell, Pamela, Zody, Michael C., Di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Reingard M.
Publicado em 2011

Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring

Por Lamichhaney, Sangeet, Barrio, Alvaro Martinez, Rafati, Nima, Sundström, Görel, Rubin, Carl-Johan, Gilbert, Elizabeth R., Berglund, Jonas, Wetterbom, Anna, Laikre, Linda, Webster, Matthew T., Grabherr, Manfred, Ryman, Nils, Andersson, Leif
Publicado em 2012

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

Por Delhomme, Nicolas, Sundström, Görel, Zamani, Neda, Lantz, Henrik, Lin, Yao-Cheng, Hvidsten, Torgeir R., Höppner, Marc P., Jern, Patric, Van de Peer, Yves, Lundeberg, Joakim, Grabherr, Manfred G., Street, Nathaniel R.
Publicado no PLoS One (2015)

High-throughput sequencing of microdissected chromosomal regions

Por Weise, Anja, Timmermann, Bernd, Grabherr, Manfred, Werber, Martin, Heyn, Patricia, Kosyakova, Nadezda, Liehr, Thomas, Neitzel, Heidemarie, Konrat, Kateryna, Bommer, Christiane, Dietrich, Carola, Rajab, Anna, Reinhardt, Richard, Mundlos, Stefan, Lindner, Tom H, Hoffmann, Katrin
Publicado em 2010

Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data

Por Grabherr, Manfred G., Haas, Brian J., Yassour, Moran, Levin, Joshua Z., Thompson, Dawn A., Amit, Ido, Adiconis, Xian, Fan, Lin, Raychowdhury, Raktima, Zeng, Qiandong, Chen, Zehua, Mauceli, Evan, Hacohen, Nir, Gnirke, Andreas, Rhind, Nicholas, di Palma, Federica, Birren, Bruce W., Nusbaum, Chad, Lindblad-Toh, Kerstin, Friedman, Nir, Regev, Aviv
Publicado em 2011

De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity

Por Haas, Brian J., Papanicolaou, Alexie, Yassour, Moran, Grabherr, Manfred, Blood, Philip D., Bowden, Joshua, Couger, Matthew Brian, Eccles, David, Li, Bo, Lieber, Matthias, MacManes, Matthew D., Ott, Michael, Orvis, Joshua, Pochet, Nathalie, Strozzi, Francesco, Weeks, Nathan, Westerman, Rick, William, Thomas, Dewey, Colin N., Henschel, Robert, LeDuc, Richard D., Friedman, Nir, Regev, Aviv
Publicado em 2013

The genomic basis of adaptive evolution in threespine sticklebacks

Por Jones, Felicity C, Grabherr, Manfred G, Chan, Yingguang Frank, Russell, Pamela, Mauceli, Evan, Johnson, Jeremy, Swofford, Ross, Pirun, Mono, Zody, Michael C, White, Simon, Birney, Ewan, Searle, Stephen, Schmutz, Jeremy, Grimwood, Jane, Dickson, Mark C, Myers, Richard M, Miller, Craig T, Summers, Brian R, Knecht, Anne K, Brady, Shannon D, Zhang, Haili, Pollen, Alex A, Howes, Timothy, Amemiya, Chris, Lander, Eric S, Di Palma, Federica, Lindblad-Toh, Kerstin, Kingsley, David M
Publicado em 2012

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

Por Hoeppner, Marc P., Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer R. S., Zamani, Neda, Johnson, Jeremy, Sundström, Görel, Cook, April, FitzGerald, Michael G., Swofford, Ross, Mauceli, Evan, Moghadam, Behrooz Torabi, Greka, Anna, Alföldi, Jessica, Abouelleil, Amr, Aftuck, Lynne, Bessette, Daniel, Berlin, Aaron, Brown, Adam, Gearin, Gary, Lui, Annie, Macdonald, J. Pendexter, Priest, Margaret, Shea, Terrance, Turner-Maier, Jason, Zimmer, Andrew, Lander, Eric S., di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Manfred G.
Publicado em 2014

Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication

Por Ma, Li-Jun, Ibrahim, Ashraf S., Skory, Christopher, Grabherr, Manfred G., Burger, Gertraud, Butler, Margi, Elias, Marek, Idnurm, Alexander, Lang, B. Franz, Sone, Teruo, Abe, Ayumi, Calvo, Sarah E., Corrochano, Luis M., Engels, Reinhard, Fu, Jianmin, Hansberg, Wilhelm, Kim, Jung-Mi, Kodira, Chinnappa D., Koehrsen, Michael J., Liu, Bo, Miranda-Saavedra, Diego, O'Leary, Sinead, Ortiz-Castellanos, Lucila, Poulter, Russell, Rodriguez-Romero, Julio, Ruiz-Herrera, José, Shen, Yao-Qing, Zeng, Qiandong, Galagan, James, Birren, Bruce W., Cuomo, Christina A., Wickes, Brian L.
Publicado em 2009