LaGomiCs—Lagomorph Genomics Consortium: An International Collaborative Effort for Sequencing the Genomes of an Entire Mammalian Order

Por Fontanesi, Luca, Di Palma, Federica, Flicek, Paul, Smith, Andrew T., Thulin, Carl-Gustaf, Alves, Paulo C.
Publicado no J Hered (2016)

Mutations in Mcoln3 associated with deafness and pigmentation defects in varitint-waddler (Va) mice

Por Di Palma, Federica, Belyantseva, Inna A., Kim, Hung J., Vogt, Thomas F., Kachar, Bechara, Noben-Trauth, Konrad
Publicado em 2002

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

Por Grabherr, Manfred G., Russell, Pamela, Meyer, Miriah, Mauceli, Evan, Alföldi, Jessica, Di Palma, Federica, Lindblad-Toh, Kerstin
Publicado em 2010

Convergent evolution of SWS2 opsin facilitates adaptive radiation of threespine stickleback into different light environments

Por Marques, David A., Taylor, John S., Jones, Felicity C., Di Palma, Federica, Kingsley, David M., Reimchen, Thomas E.
Publicado no PLoS Biol (2017)

An Improved microRNA Annotation of the Canine Genome

Por Penso-Dolfin, Luca, Swofford, Ross, Johnson, Jeremy, Alföldi, Jessica, Lindblad-Toh, Kerstin, Swarbreck, David, Moxon, Simon, Di Palma, Federica
Publicado no PLoS One (2016)

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags

Por Lee, Bo-Young, Howe, Aimee E, Conte, Matthew A, D'Cotta, Helena, Pepey, Elodie, Baroiller, Jean-Francois, di Palma, Federica, Carleton, Karen L, Kocher, Thomas D
Publicado em 2010

Unsupervised genome-wide recognition of local relationship patterns

Por Zamani, Neda, Russell, Pamela, Lantz, Henrik, Hoeppner, Marc P, Meadows, Jennifer RS, Vijay, Nagarjun, Mauceli, Evan, di Palma, Federica, Lindblad-Toh, Kerstin, Jern, Patric, Grabherr, Manfred G
Publicado em 2013

Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes

Por Eckalbar, Walter L, Hutchins, Elizabeth D, Markov, Glenn J, Allen, April N, Corneveaux, Jason J, Lindblad-Toh, Kerstin, Di Palma, Federica, Alföldi, Jessica, Huentelman, Matthew J, Kusumi, Kenro
Publicado em 2013

The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations

Por Keane, Michael, Craig, Thomas, Alföldi, Jessica, Berlin, Aaron M., Johnson, Jeremy, Seluanov, Andrei, Gorbunova, Vera, Di Palma, Federica, Lindblad-Toh, Kerstin, Church, George M., de Magalhães, João Pedro
Publicado no Bioinformatics (2014)

Exploiting Nucleotide Composition to Engineer Promoters

Por Grabherr, Manfred G., Pontiller, Jens, Mauceli, Evan, Ernst, Wolfgang, Baumann, Martina, Biagi, Tara, Swofford, Ross, Russell, Pamela, Zody, Michael C., Di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Reingard M.
Publicado em 2011

Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis

Por Pallavicini, Alberto, Canapa, Adriana, Barucca, Marco, Alfőldi, Jessica, Biscotti, Maria Assunta, Buonocore, Francesco, De Moro, Gianluca, Di Palma, Federica, Fausto, Anna Maria, Forconi, Mariko, Gerdol, Marco, Makapedua, Daisy Monica, Turner-Meier, Jason, Olmo, Ettore, Scapigliati, Giuseppe
Publicado em 2013

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)

Por Soler, Lucile, Conte, Matthew A, Katagiri, Takayuki, Howe, Aimee E, Lee, Bo-Young, Amemiya, Chris, Stuart, Andrew, Dossat, Carole, Poulain, Julie, Johnson, Jeremy, Di Palma, Federica, Lindblad-Toh, Kerstin, Baroiller, Jean-Francois, D'Cotta, Helena, Ozouf-Costaz, Catherine, Kocher, Thomas D
Publicado em 2010

Origins of Shared Genetic Variation in African Cichlids

Por Loh, Yong-Hwee E., Bezault, Etienne, Muenzel, Frauke M., Roberts, Reade B., Swofford, Ross, Barluenga, Marta, Kidd, Celeste E., Howe, Aimee E., Di Palma, Federica, Lindblad-Toh, Kerstin, Hey, Jody, Seehausen, Ole, Salzburger, Walter, Kocher, Thomas D., Streelman, J. Todd
Publicado em 2013

Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data

Por Grabherr, Manfred G., Haas, Brian J., Yassour, Moran, Levin, Joshua Z., Thompson, Dawn A., Amit, Ido, Adiconis, Xian, Fan, Lin, Raychowdhury, Raktima, Zeng, Qiandong, Chen, Zehua, Mauceli, Evan, Hacohen, Nir, Gnirke, Andreas, Rhind, Nicholas, di Palma, Federica, Birren, Bruce W., Nusbaum, Chad, Lindblad-Toh, Kerstin, Friedman, Nir, Regev, Aviv
Publicado em 2011

The genomic basis of adaptive evolution in threespine sticklebacks

Por Jones, Felicity C, Grabherr, Manfred G, Chan, Yingguang Frank, Russell, Pamela, Mauceli, Evan, Johnson, Jeremy, Swofford, Ross, Pirun, Mono, Zody, Michael C, White, Simon, Birney, Ewan, Searle, Stephen, Schmutz, Jeremy, Grimwood, Jane, Dickson, Mark C, Myers, Richard M, Miller, Craig T, Summers, Brian R, Knecht, Anne K, Brady, Shannon D, Zhang, Haili, Pollen, Alex A, Howes, Timothy, Amemiya, Chris, Lander, Eric S, Di Palma, Federica, Lindblad-Toh, Kerstin, Kingsley, David M
Publicado em 2012

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

Por Hoeppner, Marc P., Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer R. S., Zamani, Neda, Johnson, Jeremy, Sundström, Görel, Cook, April, FitzGerald, Michael G., Swofford, Ross, Mauceli, Evan, Moghadam, Behrooz Torabi, Greka, Anna, Alföldi, Jessica, Abouelleil, Amr, Aftuck, Lynne, Bessette, Daniel, Berlin, Aaron, Brown, Adam, Gearin, Gary, Lui, Annie, Macdonald, J. Pendexter, Priest, Margaret, Shea, Terrance, Turner-Maier, Jason, Zimmer, Andrew, Lander, Eric S., di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Manfred G.
Publicado em 2014

Mutation discovery in mice by whole exome sequencing

Por Fairfield, Heather, Gilbert, Griffith J, Barter, Mary, Corrigan, Rebecca R, Curtain, Michelle, Ding, Yueming, D'Ascenzo, Mark, Gerhardt, Daniel J, He, Chao, Huang, Wenhui, Richmond, Todd, Rowe, Lucy, Probst, Frank J, Bergstrom, David E, Murray, Stephen A, Bult, Carol, Richardson, Joel, Kile, Benjamin T, Gut, Ivo, Hager, Jorg, Sigurdsson, Snaevar, Mauceli, Evan, Di Palma, Federica, Lindblad-Toh, Kerstin, Cunningham, Michael L, Cox, Timothy C, Justice, Monica J, Spector, Mona S, Lowe, Scott W, Albert, Thomas, Donahue, Leah Rae, Jeddeloh, Jeffrey, Shendure, Jay, Reinholdt, Laura G
Publicado em 2011

The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease

Por Peng, Xinxia, Alföldi, Jessica, Gori, Kevin, Eisfeld, Amie J., Tyler, Scott R., Tisoncik-Go, Jennifer, Brawand, David, Law, G. Lynn, Skunca, Nives, Hatta, Masato, Gasper, David J., Kelly, Sara M., Chang, Jean, Thomas, Matthew J., Johnson, Jeremy, Berlin, Aaron M., Lara, Marcia, Russell, Pamela, Swofford, Ross, Turner-Maier, Jason, Young, Sarah, Hourlier, Thibaut, Aken, Bronwen, Searle, Steve, Sun, Xingshen, Yi, Yaling, Suresh, M., Tumpey, Terrence M., Siepel, Adam, Wisely, Samantha M., Dessimoz, Christophe, Kawaoka, Yoshihiro, Birren, Bruce W., Lindblad-Toh, Kerstin, Di Palma, Federica, Engelhardt, John F., Palermo, Robert E., Katze, Michael G.
Publicado no Nat Biotechnol (2014)

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

Por Carneiro, Miguel, Rubin, Carl-Johan, Di Palma, Federica, Albert, Frank W., Alföldi, Jessica, Martinez Barrio, Alvaro, Pielberg, Gerli, Rafati, Nima, Sayyab, Shumaila, Turner-Maier, Jason, Younis, Shady, Afonso, Sandra, Aken, Bronwen, Alves, Joel M., Barrell, Daniel, Bolet, Gerard, Boucher, Samuel, Burbano, Hernán A., Campos, Rita, Chang, Jean L., Duranthon, Veronique, Fontanesi, Luca, Garreau, Hervé, Heiman, David, Johnson, Jeremy, Mage, Rose G., Peng, Ze, Queney, Guillaume, Rogel-Gaillard, Claire, Ruffier, Magali, Searle, Steve, Villafuerte, Rafael, Xiong, Anqi, Young, Sarah, Forsberg-Nilsson, Karin, Good, Jeffrey M., Lander, Eric S., Ferrand, Nuno, Lindblad-Toh, Kerstin, Andersson, Leif
Publicado no Science (2014)

The genome of the green anole lizard and a comparative analysis with birds and mammals

Por Alföldi, Jessica, Di Palma, Federica, Grabherr, Manfred, Williams, Christina, Kong, Lesheng, Mauceli, Evan, Russell, Pamela, Lowe, Craig B., Glor, Richard, Jaffe, Jacob D., Ray, David A., Boissinot, Stephane, Shedlock, Andrew M., Botka, Christopher, Castoe, Todd A., Colbourne, John K., Fujita, Matthew K., Moreno, Ricardo Godinez, ten Hallers, Boudewijn F., Haussler, David, Heger, Andreas, Heiman, David, Janes, Daniel E., Johnson, Jeremy, de Jong, Pieter J., Koriabine, Maxim Y., Novick, Peter, Organ, Chris L., Peach, Sally E., Poe, Steven, Pollock, David D., de Queiroz, Kevin, Sanger, Thomas, Searle, Steve, Smith, Jeremy D., Smith, Zachary, Swofford, Ross, Turner-Maier, Jason, Wade, Juli, Young, Sarah, Zadissa, Amonida, Edwards, Scott V., Glenn, Travis C., Schneider, Christopher J., Losos, Jonathan B., Lander, Eric S., Breen, Matthew, Ponting, Chris P., Lindblad-Toh, Kerstin
Publicado em 2011