Inferring environmental transmission using phylodynamics: a case-study using simulated evolution of an enteric pathogen

por Dawson, Daniel, Rasmussen, David, Peng, Xinxia, Lanzas, Cristina
Publicado no J R Soc Interface (2021)

A new approach to bias correction in RNA-Seq

por Jones, Daniel C., Ruzzo, Walter L., Peng, Xinxia, Katze, Michael G.
Publicado em 2012

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

por Jones, Daniel C., Ruzzo, Walter L., Peng, Xinxia, Katze, Michael G.
Publicado em 2012

FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-γ Receptors in Human B Cells

por Peng, Xinxia, Li, Shuying S., Gilbert, Peter B., Geraghty, Daniel E., Katze, Michael G.
Publicado no PLoS One (2016)

Elucidating the Role of Host Long Non-Coding RNA during Viral Infection: Challenges and Paths Forward

por Lemler, David J., Brochu, Hayden N., Yang, Fang, Harrell, Erin A., Peng, Xinxia
Publicado no Vaccines (Basel) (2017)

Noncanonical placental Fc receptors: What is their role in modulating transplacental transfer of maternal IgG?

por Martinez, David R., Fouda, Genevieve G., Peng, Xinxia, Ackerman, Margaret E., Permar, Sallie R.
Publicado no PLoS Pathog (2018)

Virus-Host Interactions: From Systems Biology to Translational Research

por Peng, Xinxia, Chan, Eric Y., Li, Yu, Diamond, Deborah L., Korth, Marcus J., Katze, Michael G.
Publicado em 2009

Next-Generation Sequencing Reveals HIV-1-Mediated Suppression of T Cell Activation and RNA Processing and Regulation of Noncoding RNA Expression in a CD4(+) T Cell Line

por Chang, Stewart T., Sova, Pavel, Peng, Xinxia, Weiss, Jeffrey, Law, G. Lynn, Palermo, Robert E., Katze, Michael G.
Publicado em 2011

Next-Generation Sequence Analysis of the Genome of RFHVMn, the Macaque Homolog of Kaposi's Sarcoma (KS)-Associated Herpesvirus, from a KS-Like Tumor of a Pig-Tailed Macaque

por Bruce, A. Gregory, Ryan, Jonathan T., Thomas, Mathew J., Peng, Xinxia, Grundhoff, Adam, Tsai, Che-Chung, Rose, Timothy M.
Publicado em 2013

Host cell transcriptional profiling during malaria liver stage infection reveals a coordinated and sequential set of biological events

por Albuquerque, Sónia S, Carret, Céline, Grosso, Ana Rita, Tarun, Alice S, Peng, Xinxia, Kappe, Stefan HI, Prudêncio, Miguel, Mota, Maria M
Publicado em 2009

MicroRNA Expression and Virulence in Pandemic Influenza Virus-Infected Mice

por Li, Yu, Chan, Eric Y., Li, Jiangning, Ni, Chester, Peng, Xinxia, Rosenzweig, Elizabeth, Tumpey, Terrence M., Katze, Michael G.
Publicado em 2010

Simultaneous profiling of sexually transmitted bacterial pathogens, microbiome, and concordant host response in cervical samples using whole transcriptome sequencing analysis

por O'Connell, Catherine M., Brochu, Hayden, Girardi, Jenna, Harrell, Erin, Jones, Aiden, Darville, Toni, Seña, Arlene C., Peng, Xinxia
Publicado no Microb Cell (2019)

Assessment and improvement of the Plasmodium yoelii yoelii genome annotation through comparative analysis

por Vaughan, Ashley, Chiu, Sum-Ying, Ramasamy, Gowthaman, Li, Ling, Gardner, Malcolm J., Tarun, Alice S., Kappe, Stefan H.I., Peng, Xinxia
Publicado em 2008

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers

por Peng, Xinxia, Li, Yu, Walters, Kathie-Anne, Rosenzweig, Elizabeth R, Lederer, Sharon L, Aicher, Lauri D, Proll, Sean, Katze, Michael G
Publicado em 2009

The Alpha/Beta Interferon Receptor Provides Protection against Influenza Virus Replication but Is Dispensable for Inflammatory Response Signaling

por Goodman, Alan G., Zeng, Hui, Proll, Sean C., Peng, Xinxia, Cillóniz, Cristian, Carter, Victoria S., Korth, Marcus J., Tumpey, Terrence M., Katze, Michael G.
Publicado em 2010

A combined transcriptome and proteome survey of malaria parasite liver stages

por Tarun, Alice S., Peng, Xinxia, Dumpit, Ronald F., Ogata, Yuko, Silva-Rivera, Hilda, Camargo, Nelly, Daly, Thomas M., Bergman, Lawrence W., Kappe, Stefan H. I.
Publicado em 2008

Assessment and improvement of Indian‐origin rhesus macaque and Mauritian‐origin cynomolgus macaque genome annotations using deep transcriptome sequencing data

por Peng, Xinxia, Pipes, Lenore, Xiong, Hao, Green, Richard R., Jones, Daniel C., Ruzzo, Walter L., Schroth, Gary P., Mason, Christopher E., Palermo, Robert E., Katze, Michael G.
Publicado em 2014

Systematic Profiling of Full-Length Ig and TCR Repertoire Diversity in Rhesus Macaque through Long Read Transcriptome Sequencing

por Brochu, Hayden N., Tseng, Elizabeth, Smith, Elise, Thomas, Matthew J., Jones, Aiden M., Diveley, Kayleigh R., Law, Lynn, Hansen, Scott G., Picker, Louis J., Gale, Michael, Peng, Xinxia
Publicado no J Immunol (2020)

Porcine Vocal Fold Lamina Propria-Derived Biomaterials Modulate TGF-β1 Mediated Fibroblast Activation In vitro

por Mora-Navarro, Camilo, Badileanu, Andreea, Gracioso Martins, Ana M., Ozpinar, Emily W., Gaffney, Lewis, Huntress, Ian, Harrell, Erin, Enders, Jeffrey R., Peng, Xinxia, Branski, Ryan C., Freytes, Donald O.
Publicado no ACS Biomater Sci Eng (2020)

Deep Sequencing of HIV-Infected Cells: Insights into Nascent Transcription and Host-Directed Therapy

por Peng, Xinxia, Sova, Pavel, Green, Richard R., Thomas, Matthew J., Korth, Marcus J., Proll, Sean, Xu, Jiabao, Cheng, Yanbing, Yi, Kang, Chen, Li, Peng, Zhiyu, Wang, Jun, Palermo, Robert E., Katze, Michael G.
Publicado em 2014