Energetics of Gliding Motility in Mycoplasma mobile

Por Jaffe, Jacob D., Miyata, Makoto, Berg, Howard C.
Publicado em 2004

Directed Sample Interrogation Utilizing an Accurate Mass Exclusion-Based Data-Dependent Acquisition Strategy (AMEx)

Por Rudomin, Emily L., Carr, Steven A., Jaffe, Jacob D.
Publicado em 2009

Transitioning from Targeted to Comprehensive Mass Spectrometry using Genetic Algorithms

Por Jaffe, Jacob D., Feeney, Caitlin M., Patel, Jinal, Lu, Xiaodong, Mani, D. R.
Publicado no J Am Soc Mass Spectrom (2016)

Quantitative Assessment of Chromatin Immunoprecipitation Grade Antibodies Directed against Histone Modifications Reveals Patterns of Co-occurring Marks on Histone Protein Molecules

Por Peach, Sally E., Rudomin, Emily L., Udeshi, Namrata D., Carr, Steven A., Jaffe, Jacob D.
Publicado em 2012

Accurate Inclusion Mass Screening: A Bridge from Unbiased Discovery to Targeted Assay Development for Biomarker Verification

Por Jaffe, Jacob D., Keshishian, Hasmik, Chang, Betty, Addona, Theresa A., Gillette, Michael A., Carr, Steven A.
Publicado em 2008

PEPPeR: A Platform for Experimental Proteomic Pattern Recognition

Por Jaffe, Jacob D., Mani, D. R., Leptos, Kyriacos C., Church, George M., Gillette, Michael A., Carr, Steven A.
Publicado em 2009

Naturally occurring aminoacyl-tRNA synthetases editing-domain mutations that cause mistranslation in Mycoplasma parasites

Por Li, Li, Boniecki, Michal T., Jaffe, Jacob D., Imai, Brian S., Yau, Peter M., Luthey-Schulten, Zaida A., Martinis, Susan A.
Publicado em 2011

H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions

Por Ku, Manching, Jaffe, Jacob D, Koche, Richard P, Rheinbay, Esther, Endoh, Mitsuhiro, Koseki, Haruhiko, Carr, Steven A, Bernstein, Bradley E
Publicado em 2012

iTRAQ Labeling is Superior to mTRAQ for Quantitative Global Proteomics and Phosphoproteomics

Por Mertins, Philipp, Udeshi, Namrata D., Clauser, Karl R., Mani, DR, Patel, Jinal, Ong, Shao-en, Jaffe, Jacob D., Carr, Steven A.
Publicado em 2012

Methods for Quantification of in vivo Changes in Protein Ubiquitination following Proteasome and Deubiquitinase Inhibition

Por Udeshi, Namrata D., Mani, D. R., Eisenhaure, Thomas, Mertins, Philipp, Jaffe, Jacob D., Clauser, Karl R., Hacohen, Nir, Carr, Steven A.
Publicado em 2012

H2A.Z.1 mono-ubiquitylation antagonizes BRD2 to maintain poised chromatin in ESCs

Por Surface, Lauren E., Fields, Paul A., Subramanian, Vidya, Behmer, Russell, Udeshi, Namrata, Peach, Sally E., Jaffe, Jacob D., Boyer, Laurie A.
Publicado no Cell Rep (2016)

Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow

Por Svinkina, Tanya, Gu, Hongbo, Silva, Jeffrey C., Mertins, Philipp, Qiao, Jana, Fereshetian, Shaunt, Jaffe, Jacob D., Kuhn, Eric, Udeshi, Namrata D., Carr, Steven A.
Publicado no Mol Cell Proteomics (2015)

Integrated proteomic analysis of post-translational modifications by serial enrichment

Por Mertins, Philipp, Qiao, Jana W, Patel, Jinal, Udeshi, Namrata D, Clauser, Karl R, Mani, D R, Burgess, Michael W, Gillette, Michael A, Jaffe, Jacob D, Carr, Steven A
Publicado em 2013

Developmental control of Polycomb subunit composition by GATA factors mediates a switch to non-canonical functions

Por Xu, Jian, Shao, Zhen, Li, Dan, Xie, Huafeng, Kim, Woojin, Huang, Jialiang, Taylor, Jordan E., Pinello, Luca, Glass, Kimberly, Jaffe, Jacob D., Yuan, Guo-Cheng, Orkin, Stuart H.
Publicado no Mol Cell (2015)

STK33 kinase inhibitor BRD-8899 has no effect on KRAS-dependent cancer cell viability

Por Luo, Tuoping, Masson, Kristina, Jaffe, Jacob D., Silkworth, Whitney, Ross, Nathan T., Scherer, Christina A., Scholl, Claudia, Fröhling, Stefan, Carr, Steven A., Stern, Andrew M., Schreiber, Stuart L., Golub, Todd R.
Publicado em 2012

Building the connectivity map of epigenetics: Chromatin profiling by quantitative targeted mass spectrometry

Por Creech, Amanda L., Taylor, Jordan E., Maier, Verena K., Wu, Xiaoyun, Feeney, Caitlin M., Udeshi, Namrata D., Peach, Sally E., Boehm, Jesse S., Lee, Jeannie T., Carr, Steven A., Jaffe, Jacob D.
Publicado no Methods (2014)

Functional Proteomic Analysis of Repressive Histone Methyltransferase Complexes Reveals ZNF518B as a G9A Regulator

Por Maier, Verena K., Feeney, Caitlin M., Taylor, Jordan E., Creech, Amanda L., Qiao, Jana W., Szanto, Attila, Das, Partha P., Chevrier, Nicholas, Cifuentes-Rojas, Catherine, Orkin, Stuart H., Carr, Steven A., Jaffe, Jacob D., Mertins, Philipp, Lee, Jeannie T.
Publicado no Mol Cell Proteomics (2015)

Castration resistance in prostate cancer is mediated by the kinase NEK6

Por Choudhury, Atish D., Schinzel, Anna C., Cotter, Maura B., Lis, Rosina T., Labella, Katherine, Lock, Ying Jie, Izzo, Francesca, Guney, Isil, Bowden, Michaela, Li, Yvonne Y., Patel, Jinal, Hartman, Emily, Carr, Steven A., Schenone, Monica, Jaffe, Jacob D., Kantoff, Philip W., Hammerman, Peter S., Hahn, William C.
Publicado no Cancer Res (2016)

The Complete Genome and Proteome of Mycoplasma mobile

Por Jaffe, Jacob D., Stange-Thomann, Nicole, Smith, Cherylyn, DeCaprio, David, Fisher, Sheila, Butler, Jonathan, Calvo, Sarah, Elkins, Tim, FitzGerald, Michael G., Hafez, Nabil, Kodira, Chinnappa D., Major, John, Wang, Shunguang, Wilkinson, Jane, Nicol, Robert, Nusbaum, Chad, Birren, Bruce, Berg, Howard C., Church, George M.
Publicado em 2004

Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS Capture Cellular States and Enable Large-scale Comparison of Drug-induced Phenotypes

Por Abelin, Jennifer G., Patel, Jinal, Lu, Xiaodong, Feeney, Caitlin M., Fagbami, Lola, Creech, Amanda L., Hu, Roger, Lam, Daniel, Davison, Desiree, Pino, Lindsay, Qiao, Jana W., Kuhn, Eric, Officer, Adam, Li, Jianxue, Abbatiello, Susan, Subramanian, Aravind, Sidman, Richard, Snyder, Evan, Carr, Steven A., Jaffe, Jacob D.
Publicado no Mol Cell Proteomics (2016)