Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics

Por Mani, D R, Abbatiello, Susan E, Carr, Steven A
Publicado em 2012

Automated Detection of Inaccurate and Imprecise Transitions in Peptide Quantification by Multiple Reaction Monitoring Mass Spectrometry

Por Abbatiello, Susan E., Mani, D. R., Keshishian, Hasmik, Carr, Steven A.
Publicado em 2009

Improved Sensitivity of Ultralow Flow LC–MS-Based Proteomic Profiling of Limited Samples Using Monolithic Capillary Columns and FAIMS Technology

Por Greguš, Michal, Kostas, James C., Ray, Somak, Abbatiello, Susan E., Ivanov, Alexander R.
Publicado no Anal Chem (2020)

MSstatsQC: Longitudinal System Suitability Monitoring and Quality Control for Targeted Proteomic Experiments

Por Dogu, Eralp, Mohammad-Taheri, Sara, Abbatiello, Susan E., Bereman, Michael S., MacLean, Brendan, Schilling, Birgit, Vitek, Olga
Publicado no Mol Cell Proteomics (2017)

Comprehensive LESA Mass Spectrometry Imaging of Intact Proteins by Integration of Cylindrical FAIMS

Por Griffiths, Rian L., Hughes, James W., Abbatiello, Susan E., Belford, Michael W., Styles, Iain B., Cooper, Helen J.
Publicado no Anal Chem (2020)

Nonlinear Regression Improves Accuracy of Characterization of Multiplexed Mass Spectrometric Assays

Por Galitzine, Cyril, Egertson, Jarrett D., Abbatiello, Susan, Henderson, Clark M., Pino, Lindsay K., MacCoss, Michael, Hoofnagle, Andrew N., Vitek, Olga
Publicado no Mol Cell Proteomics (2018)

Effect of Collision Energy Optimization on the Measurement of Peptides by Selected Reaction Monitoring (SRM) Mass Spectrometry

Por MacLean, Brendan, Tomazela, Daniela M., Abbatiello, Susan E., Zhang, Shucha, Whiteaker, Jeffrey R., Paulovich, Amanda G., Carr, Steven A., MacCoss, Michael J.
Publicado em 2010

Evaluation of Large Scale Quantitative Proteomic Assay Development Using Peptide Affinity-based Mass Spectrometry

Por Whiteaker, Jeffrey R., Zhao, Lei, Abbatiello, Susan E., Burgess, Michael, Kuhn, Eric, Lin, ChenWei, Pope, Matthew E., Razavi, Morteza, Anderson, N. Leigh, Pearson, Terry W., Carr, Steven A., Paulovich, Amanda G.
Publicado em 2011

Comprehensive Single-Shot Proteomics with FAIMS on a Hybrid Orbitrap Mass Spectrometer

Por Hebert, Alexander S., Prasad, Satendra, Belford, Michael W., Bailey, Derek J., McAlister, Graeme C., Abbatiello, Susan E., Huguet, Romain, Wouters, Eloy R., Dunyach, Jean-Jacques, Brademan, Dain R., Westphall, Michael S., Coon, Joshua J.
Publicado no Anal Chem (2018)

Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry

Por Schweppe, Devin K., Prasad, Satendra, Belford, Michael W., Navarrete-Perea, José, Bailey, Derek J., Huguet, Romain, Jedrychowski, Mark P., Rad, Ramin, McAlister, Graeme, Abbatiello, Susan E., Woulters, Eloy R., Zabrouskov, Vlad, Dunyach, Jean-Jacques, Paulo, João A., Gygi, Steven P.
Publicado no Anal Chem (2019)

A framework for installable external tools in Skyline

Por Broudy, Daniel, Killeen, Trevor, Choi, Meena, Shulman, Nicholas, Mani, Deepak R., Abbatiello, Susan E., Mani, Deepak, Ahmad, Rushdy, Sahu, Alexandria K., Schilling, Birgit, Tamura, Kaipo, Boss, Yuval, Sharma, Vagisha, Gibson, Bradford W., Carr, Steven A., Vitek, Olga, MacCoss, Michael J., MacLean, Brendan
Publicado em 2014

Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS Capture Cellular States and Enable Large-scale Comparison of Drug-induced Phenotypes

Por Abelin, Jennifer G., Patel, Jinal, Lu, Xiaodong, Feeney, Caitlin M., Fagbami, Lola, Creech, Amanda L., Hu, Roger, Lam, Daniel, Davison, Desiree, Pino, Lindsay, Qiao, Jana W., Kuhn, Eric, Officer, Adam, Li, Jianxue, Abbatiello, Susan, Subramanian, Aravind, Sidman, Richard, Snyder, Evan, Carr, Steven A., Jaffe, Jacob D.
Publicado no Mol Cell Proteomics (2016)

New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins

Por Abbatiello, Susan, Ackermann, Bradley L., Borchers, Christoph, Bradshaw, Ralph A., Carr, Steven A., Chalkley, Robert, Choi, Meena, Deutsch, Eric, Domon, Bruno, Hoofnagle, Andrew N., Keshishian, Hasmik, Kuhn, Eric, Liebler, Daniel C., MacCoss, Michael, MacLean, Brendan, Mani, DR, Neubert, Hendrik, Smith, Derek, Vitek, Olga, Zimmerman, Lisa
Publicado no Mol Cell Proteomics (2017)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins

Por Kennedy, Jacob J., Abbatiello, Susan E., Kim, Kyunggon, Yan, Ping, Whiteaker, Jeffrey R., Lin, Chenwei, Kim, Jun Seok, Zhang, Yuzheng, Wang, Xianlong, Ivey, Richard G., Zhao, Lei, Min, Hophil, Lee, Youngju, Yu, Myeong-Hee, Yang, Eun Gyeong, Lee, Cheolju, Wang, Pei, Rodriguez, Henry, Kim, Youngsoo, Carr, Steven A., Paulovich, Amanda G.
Publicado em 2013

Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma

Por Abbatiello, Susan E., Schilling, Birgit, Mani, D. R., Zimmerman, Lisa J., Hall, Steven C., MacLean, Brendan, Albertolle, Matthew, Allen, Simon, Burgess, Michael, Cusack, Michael P., Gosh, Mousumi, Hedrick, Victoria, Held, Jason M., Inerowicz, H. Dorota, Jackson, Angela, Keshishian, Hasmik, Kinsinger, Christopher R., Lyssand, John, Makowski, Lee, Mesri, Mehdi, Rodriguez, Henry, Rudnick, Paul, Sadowski, Pawel, Sedransk, Nell, Shaddox, Kent, Skates, Stephen J., Kuhn, Eric, Smith, Derek, Whiteaker, Jeffery R., Whitwell, Corbin, Zhang, Shucha, Borchers, Christoph H., Fisher, Susan J., Gibson, Bradford W., Liebler, Daniel C., MacCoss, Michael J., Neubert, Thomas A., Paulovich, Amanda G., Regnier, Fred E., Tempst, Paul, Carr, Steven A.
Publicado no Mol Cell Proteomics (2015)

Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach

Por Carr, Steven A., Abbatiello, Susan E., Ackermann, Bradley L., Borchers, Christoph, Domon, Bruno, Deutsch, Eric W., Grant, Russell P., Hoofnagle, Andrew N., Hüttenhain, Ruth, Koomen, John M., Liebler, Daniel C., Liu, Tao, MacLean, Brendan, Mani, DR, Mansfield, Elizabeth, Neubert, Hendrik, Paulovich, Amanda G., Reiter, Lukas, Vitek, Olga, Aebersold, Ruedi, Anderson, Leigh, Bethem, Robert, Blonder, Josip, Boja, Emily, Botelho, Julianne, Boyne, Michael, Bradshaw, Ralph A., Burlingame, Alma L., Chan, Daniel, Keshishian, Hasmik, Kuhn, Eric, Kinsinger, Christopher, Lee, Jerry S.H., Lee, Sang-Won, Moritz, Robert, Oses-Prieto, Juan, Rifai, Nader, Ritchie, James, Rodriguez, Henry, Srinivas, Pothur R., Townsend, R. Reid, Van Eyk, Jennifer, Whiteley, Gordon, Wiita, Arun, Weintraub, Susan
Publicado em 2014

Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reactio...

Por Abbatiello, Susan E., Mani, D. R., Schilling, Birgit, MacLean, Brendan, Zimmerman, Lisa J., Feng, Xingdong, Cusack, Michael P., Sedransk, Nell, Hall, Steven C., Addona, Terri, Allen, Simon, Dodder, Nathan G., Ghosh, Mousumi, Held, Jason M., Hedrick, Victoria, Inerowicz, H. Dorota, Jackson, Angela, Keshishian, Hasmik, Kim, Jong Won, Lyssand, John S., Riley, C. Paige, Rudnick, Paul, Sadowski, Pawel, Shaddox, Kent, Smith, Derek, Tomazela, Daniela, Wahlander, Asa, Waldemarson, Sofia, Whitwell, Corbin A., You, Jinsam, Zhang, Shucha, Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Borchers, Christoph H., Buck, Charles, Fisher, Susan J., Gibson, Bradford W., Liebler, Daniel, MacCoss, Michael, Neubert, Thomas A., Paulovich, Amanda, Regnier, Fred, Skates, Steven J., Tempst, Paul, Wang, Mu, Carr, Steven A.
Publicado em 2013

Using the CPTAC Assay Portal to identify and implement highly characterized targeted proteomics assays

Por Whiteaker, Jeffrey R, Halusa, Goran N, Hoofnagle, Andrew N, Sharma, Vagisha, MacLean, Brendan, Yan, Ping, Wrobel, John A, Kennedy, Jacob, Mani, DR, Zimmerman, Lisa J, Meyer, Matthew R., Mesri, Mehdi, Abbatiello, Susan E, Boja, Emily, Carr, Steven A., Chan, Daniel W., Chen, Xian, Chen, Jing, Davies, Sherri R, Ellis, Matthew J. C., Fenyö, David, Hiltke, Tara, Ketchum, Karen A., Kinsinger, Chris, Kuhn, Eric, Liebler, Daniel C., Lin, De, Liu, Tao, Loss, Michael, MacCoss, Michael J, Qian, Wei-Jun, Rivers, Robert, Rodland, Karin D., Ruggles, Kelly V, Scott, Mitchell G, Smith, Richard D., Thomas, Stefani, Townsend, R. Reid, Whiteley, Gordon, Wu, Chaochao, Zhang, Hui, Zhang, Zhen, Rodriguez, Henry, Paulovich, Amanda G
Publicado no Methods Mol Biol (2016)

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Por Addona, Terri A, Abbatiello, Susan E, Schilling, Birgit, Skates, Steven J, Mani, D R, Bunk, David M, Spiegelman, Clifford H, Zimmerman, Lisa J, Ham, Amy-Joan L, Keshishian, Hasmik, Hall, Steven C, Allen, Simon, Blackman, Ronald K, Borchers, Christoph H, Buck, Charles, Cardasis, Helene L, Cusack, Michael P, Dodder, Nathan G, Gibson, Bradford W, Held, Jason M, Hiltke, Tara, Jackson, Angela, Johansen, Eric B, Kinsinger, Christopher R, Li, Jing, Mesri, Mehdi, Neubert, Thomas A, Niles, Richard K, Pulsipher, Trenton C, Ransohoff, David, Rodriguez, Henry, Rudnick, Paul A, Smith, Derek, Tabb, David L, Tegeler, Tony J, Variyath, Asokan M, Vega-Montoto, Lorenzo J, Wahlander, Åsa, Waldemarson, Sofia, Wang, Mu, Whiteaker, Jeffrey R, Zhao, Lei, Anderson, N Leigh, Fisher, Susan J, Liebler, Daniel C, Paulovich, Amanda G, Regnier, Fred E, Tempst, Paul, Carr, Steven A
Publicado em 2009