Advances in quantitative high-throughput phosphoproteomics with sample multiplexing

Autor Paulo, Joao A., Schweppe, Devin K.
Vydáno v Proteomics (2021)

Quantitative Phosphoproteomic Profiling of Human Non-Small Cell Lung Cancer Tumors

Autor Schweppe, Devin K., Rigas, James R., Gerber, Scott A.
Vydáno 2013

XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking

Autor Schweppe, Devin K., Chavez, Juan D., Bruce, James E.
Vydáno v Bioinformatics (2016)

A Nondesensitizing Kainate Receptor Point Mutant

Autor Nayeem, Naushaba, Zhang, Yihong, Schweppe, Devin K., Madden, Dean R., Green, Tim
Vydáno 2009

In vivo conformational dynamics of Hsp90 and its interactors

Autor Chavez, Juan D., Schweppe, Devin K., Eng, Jimmy K., Bruce, James E.
Vydáno v Cell Chem Biol (2016)

Optimized Workflow for Multiplexed Phosphorylation Analysis of TMT-Labeled Peptides Using High-Field Asymmetric Waveform Ion Mobility Spectrometry

Autor Schweppe, Devin K., Rusin, Scott F., Gygi, Steven P., Paulo, Joao A.
Vydáno v J Proteome Res (2019)

BioPlex Display: An Interactive Suite for Large-Scale AP–MS Protein–Protein Interaction Data

Autor Schweppe, Devin K., Huttlin, Edward L., Harper, J. Wade, Gygi, Steven P.
Vydáno v J Proteome Res (2017)

Large-scale and targeted quantitative cross-linking MS using isotope-labeled protein interaction reporter (PIR) cross-linkers

Autor Zhong, Xuefei, Navare, Arti T., Chavez, Juan D., Eng, Jimmy K., Schweppe, Devin K., Bruce, James E.
Vydáno v J Proteome Res (2016)

Quantitative Phosphoproteomics Identifies Substrates and Functional Modules of Aurora and Polo-Like Kinase Activities in Mitotic Cells

Autor Kettenbach, Arminja N., Schweppe, Devin K., Faherty, Brendan K., Pechenick, Dov, Pletnev, Alexandre A., Gerber, Scott A.
Vydáno 2011

XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data

Autor Schweppe, Devin K., Zheng, Chunxiang, Chavez, Juan D., Navare, Arti T., Wu, Xia, Eng, Jimmy K., Bruce, James E.
Vydáno v Bioinformatics (2016)

Parallel Notched Gas-Phase Enrichment for Improved Proteome Identification and Quantification with Fast Spectral Acquisition Rates

Autor Erickson, Brian K., Schweppe, Devin K., Yu, Qing, Rad, Ramin, Haas, Wilhem, McAlister, Graeme C., Gygi, Steven P.
Vydáno v J Proteome Res (2020)

Quantitative interactome analysis reveals a chemoresistant edgotype

Autor Chavez, Juan D., Schweppe, Devin K., Eng, Jimmy K., Zheng, Chunxiang, Taipale, Alex, Zhang, Yiyi, Takara, Kohji, Bruce, James E.
Vydáno v Nat Commun (2015)

Host-microbe protein interactions during bacterial infection

Autor Schweppe, Devin K., Harding, Christopher, Chavez, Juan D., Wu, Xia, Ramage, Elizabeth, Singh, Pradeep K., Manoil, Colin, Bruce, James E.
Vydáno v Chem Biol (2015)

Spectral library searching to identify cross-linked peptides

Autor Schweppe, Devin K, Chavez, Juan D, Navare, Arti T, Wu, Xia, Ruiz, Bianca, Eng, Jimmy K, Lam, Henry, Bruce, James E
Vydáno v J Proteome Res (2016)

Integrating cross-linking experiments with ab initio protein-protein docking

Autor Vreven, Thom, Schweppe, Devin K., Chavez, Juan D., Weisbrod, Chad R., Shibata, Sayaka, Zheng, Chunxiang, Bruce, James E., Weng, Zhiping
Vydáno v J Mol Biol (2018)

In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of β-Lactamase Enzymes

Autor Zhong, Xuefei, Wu, Xia, Schweppe, Devin K., Chavez, Juan D., Mathay, Martin, Eng, Jimmy K., Keller, Andrew, Bruce, James E.
Vydáno v J Am Soc Mass Spectrom (2019)

Sample multiplexing for targeted pathway proteomics in aging mice

Autor Yu, Qing, Xiao, Haopeng, Jedrychowski, Mark P., Schweppe, Devin K., Navarrete-Perea, Jose, Knott, Jeffrey, Rogers, John, Chouchani, Edward T., Gygi, Steven P.
Vydáno v Proc Natl Acad Sci U S A (2020)

TomahaqCompanion: A Tool for the Creation and Analysis of Isobaric Label Based Multiplexed Targeted Assays

Autor Rose, Christopher M., Erickson, Brian K., Schweppe, Devin K., Viner, Rosa, Choi, Jae, Rogers, John, Bomgarden, Ryan, Gygi, Steven P., Kirkpatrick, Donald S.
Vydáno v J Proteome Res (2018)

Active Instrument Engagement Combined with a Real-Time Database Search for Improved Performance of Sample Multiplexing Workflows

Autor Erickson, Brian K., Mintseris, Julian, Schweppe, Devin K., Navarrete-Perea, José, Erickson, Alison R., Nusinow, David P., Paulo, Joao A., Gygi, Steven P.
Vydáno v J Proteome Res (2019)

Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry

Autor Schweppe, Devin K., Chavez, Juan D., Lee, Chi Fung, Caudal, Arianne, Kruse, Shane E., Stuppard, Rudy, Marcinek, David J., Shadel, Gerald S., Tian, Rong, Bruce, James E.
Vydáno v Proc Natl Acad Sci U S A (2017)