Evaluating Multiplexed Quantitative Phosphopeptide Analysis on a Hybrid Quadrupole Mass Filter/Linear Ion Trap/Orbitrap Mass Spectrometer

per Erickson, Brian K., Jedrychowski, Mark P., McAlister, Graeme C., Everley, Robert A., Kunz, Ryan, Gygi, Steven P.
Publicat a Anal Chem (2014)

Parallel Notched Gas-Phase Enrichment for Improved Proteome Identification and Quantification with Fast Spectral Acquisition Rates

per Erickson, Brian K., Schweppe, Devin K., Yu, Qing, Rad, Ramin, Haas, Wilhem, McAlister, Graeme C., Gygi, Steven P.
Publicat a J Proteome Res (2020)

Generation of Multiple Reporter Ions from a Single Isobaric Reagent Increases Multiplexing Capacity for Quantitative Proteomics

per Braun, Craig R., Bird, Gregory H., Wuhr, Martin, Erickson, Brian K., Rad, Ramin, Walensky, Loren D., Gygi, Steven P., Haas, Wilhelm
Publicat a Anal Chem (2015)

TomahaqCompanion: A Tool for the Creation and Analysis of Isobaric Label Based Multiplexed Targeted Assays

per Rose, Christopher M., Erickson, Brian K., Schweppe, Devin K., Viner, Rosa, Choi, Jae, Rogers, John, Bomgarden, Ryan, Gygi, Steven P., Kirkpatrick, Donald S.
Publicat a J Proteome Res (2018)

Active Instrument Engagement Combined with a Real-Time Database Search for Improved Performance of Sample Multiplexing Workflows

per Erickson, Brian K., Mintseris, Julian, Schweppe, Devin K., Navarrete-Perea, José, Erickson, Alison R., Nusinow, David P., Paulo, Joao A., Gygi, Steven P.
Publicat a J Proteome Res (2019)

MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes

per McAlister, Graeme C., Nusinow, David P., Jedrychowski, Mark P., Wühr, Martin, Huttlin, Edward L., Erickson, Brian K., Rad, Ramin, Haas, Wilhelm, Gygi, Steven P.
Publicat 2014

Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics

per Schweppe, Devin K., Eng, Jimmy K., Yu, Qing, Bailey, Derek, Rad, Ramin, Navarrete-Perea, Jose, Huttlin, Edward L., Erickson, Brian K., Paulo, Joao A., Gygi, Steven P.
Publicat a J Proteome Res (2020)

A Strategy to Combine Sample Multiplexing with Targeted Proteomics Assays for High-throughput Protein Signature Characterization

per Erickson, Brian K., Rose, Christopher M., Braun, Craig R., Erickson, Alison R., Knott, Jeffrey, McAlister, Graeme C., Wühr, Martin, Paulo, Joao A., Everley, Robert A., Gygi, Steven P.
Publicat a Mol Cell (2017)

Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome

per McNulty, Nathan P., Wu, Meng, Erickson, Alison R., Pan, Chongle, Erickson, Brian K., Martens, Eric C., Pudlo, Nicholas A., Muegge, Brian D., Henrissat, Bernard, Hettich, Robert L., Gordon, Jeffrey I.
Publicat 2013

The Nuclear Proteome of a Vertebrate

per Wühr, Martin, Güttler, Thomas, Peshkin, Leonid, McAlister, Graeme C., Sonnett, Matthew, Ishihara, Keisuke, Groen, Aaron C., Presler, Marc, Erickson, Brian K., Mitchison, Timothy J., Kirschner, Marc W., Gygi, Steven P.
Publicat a Curr Biol (2015)

Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

per Cantarel, Brandi L., Erickson, Alison R., VerBerkmoes, Nathan C., Erickson, Brian K., Carey, Patricia A., Pan, Chongle, Shah, Manesh, Mongodin, Emmanuel F., Jansson, Janet K., Fraser-Liggett, Claire M., Hettich, Robert L.
Publicat 2011

A Creatine-Driven Substrate Cycle Enhances Energy Expenditure and Thermogenesis in Beige Fat

per Kazak, Lawrence, Chouchani, Edward T., Jedrychowski, Mark P., Erickson, Brian K., Shinoda, Kosaku, Cohen, Paul, Vetrivelan, Ramalingam, Lu, Gina Z., Laznik-Bogoslavski, Dina, Hasenfuss, Sebastian C., Kajimura, Shingo, Gygi, Steve P., Spiegelman, Bruce M.
Publicat a Cell (2015)

Mitochondrial ROS regulate thermogenic energy expenditure and sulfenylation of UCP1

per Chouchani, Edward T., Kazak, Lawrence, Jedrychowski, Mark P., Lu, Gina Z., Erickson, Brian K., Szpyt, John, Pierce, Kerry A., Laznik-Bogoslavski, Dina, Vetrivelan, Ramalingam, Clish, Clary B., Robinson, Alan J., Gygi, Steve P., Spiegelman, Bruce M.
Publicat a Nature (2016)

Identification and quantification of protein S-nitrosation by nitrite in the mouse heart during ischemia

per Chouchani, Edward T., James, Andrew M., Methner, Carmen, Pell, Victoria R., Prime, Tracy A., Erickson, Brian K., Forkink, Marleen, Lau, Gigi Y., Bright, Thomas P., Menger, Katja E., Fearnley, Ian M., Krieg, Thomas, Murphy, Michael P.
Publicat a J Biol Chem (2017)

UCP1 deficiency causes brown fat respiratory chain depletion and sensitizes mitochondria to calcium overload-induced dysfunction

per Kazak, Lawrence, Chouchani, Edward T., Stavrovskaya, Irina G., Lu, Gina Z., Jedrychowski, Mark P., Egan, Daniel F., Kumari, Manju, Kong, Xingxing, Erickson, Brian K., Szpyt, John, Rosen, Evan D., Murphy, Michael P., Kristal, Bruce S., Gygi, Steven P., Spiegelman, Bruce M.
Publicat a Proc Natl Acad Sci U S A (2017)

Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response

per Maculins, Timurs, Verschueren, Erik, Hinkle, Trent, Choi, Meena, Chang, Patrick, Chalouni, Cecile, Rao, Shilpa, Kwon, Youngsu, Lim, Junghyun, Katakam, Anand Kumar, Kunz, Ryan C, Erickson, Brian K, Huang, Ting, Tsai, Tsung-Heng, Vitek, Olga, Reichelt, Mike, Senbabaoglu, Yasin, Mckenzie, Brent, Rohde, John R, Dikic, Ivan, Kirkpatrick, Donald S, Murthy, Aditya
Publicat a eLife (2021)

Quantitative Proteomics of the Cancer Cell Line Encyclopedia

per Nusinow, David P., Szpyt, John, Ghandi, Mahmoud, Rose, Christopher M., McDonald, E. Robert, Kalocsay, Marian, Jané-Valbuena, Judit, Gelfand, Ellen, Schweppe, Devin K., Jedrychowski, Mark, Golji, Javad, Porter, Dale A., Rejtar, Tomas, Wang, Y. Karen, Kryukov, Gregory V., Stegmeier, Frank, Erickson, Brian K., Garraway, Levi A., Sellers, William R., Gygi, Steven P.
Publicat a Cell (2020)

Architecture of the human interactome defines protein communities and disease networks

per Huttlin, Edward L., Bruckner, Raphael J., Paulo, Joao A., Cannon, Joe R., Ting, Lily, Baltier, Kurt, Colby, Greg, Gebreab, Fana, Gygi, Melanie P., Parzen, Hannah, Szpyt, John, Tam, Stanley, Zarraga, Gabriela, Pontano-Vaites, Laura, Swarup, Sharan, White, Anne E., Schweppe, Devin K., Rad, Ramin, Erickson, Brian K., Obar, Robert A., Guruharsha, K.G., Li, Kejie, Artavanis-Tsakonas, Spyros, Gygi, Steven P., Harper, J. Wade
Publicat a Nature (2017)

The BioPlex Network: A Systematic Exploration of the Human Interactome

per Huttlin, Edward L., Ting, Lily, Bruckner, Raphael J., Gebreab, Fana, Gygi, Melanie P., Szpyt, John, Tam, Stanley, Zarraga, Gabriela, Colby, Greg, Baltier, Kurt, Dong, Rui, Guarani, Virginia, Vaites, Laura Pontano, Ordureau, Alban, Rad, Ramin, Erickson, Brian K., Wühr, Martin, Chick, Joel, Zhai, Bo, Kolippakkam, Deepak, Mintseris, Julian, Obar, Robert A., Harris, Tim, Artavanis-Tsakonas, Spyros, Sowa, Mathew E., DeCamilli, Pietro, Paulo, Joao A., Harper, J. Wade, Gygi, Steven P.
Publicat a Cell (2015)