Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics

Por Peterson, Amelia C., Russell, Jason D., Bailey, Derek J., Westphall, Michael S., Coon, Joshua J.
Publicado em 2012

Intelligent Data Acquisition Blends Targeted and Discovery Methods

Por Bailey, Derek J., McDevitt, Molly T., Westphall, Michael S., Pagliarini, David J., Coon, Joshua J.
Publicado em 2014

COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA

Por Wenger, Craig D., Phanstiel, Douglas H., Lee, M. Violet, Bailey, Derek J., Coon, Joshua J.
Publicado em 2011

Statistical Analysis of Electron Transfer Dissociation Pairwise Fragmentation Patterns

Por Li, Wenzhou, Song, Chi, Bailey, Derek J., Tseng, George C., Coon, Joshua J., Wysocki, Vicki H.
Publicado em 2011

Neutron Encoded Labeling for Peptide Identification

Por Rose, Christopher M., Merrill, Anna E., Bailey, Derek J., Hebert, Alexander S., Westphall, Michael S., Coon, Joshua J.
Publicado em 2013

The One Hour Yeast Proteome

Por Hebert, Alexander S., Richards, Alicia L., Bailey, Derek J., Ulbrich, Arne, Coughlin, Emma E., Westphall, Michael S., Coon, Joshua J.
Publicado em 2014

NeuCode labels with parallel reaction monitoring for multiplexed, absolute protein quantification

Por Potts, Gregory K., Voigt, Emily A., Bailey, Derek J., Westphall, Michael S., Hebert, Alexander S., Yin, John, Coon, Joshua J.
Publicado no Anal Chem (2016)

Characterizing Peptide Neutral Losses Induced by Negative Electron-Transfer Dissociation (NETD)

Por Rumachik, Neil G., McAlister, Graeme C., Russell, Jason D., Bailey, Derek J., Wenger, Craig D., Coon, Joshua J.
Publicado em 2012

High-Resolution Filtering for Improved Small Molecule Identification via GC/MS

Por Kwiecien, Nicholas W., Bailey, Derek J., Rush, Matthew J.P., Cole, Jason S., Ulbrich, Arne, Hebert, Alexander S., Westphall, Michael S., Coon, Joshua J.
Publicado no Anal Chem (2015)

Neutron-encoded mass signatures for multi-plexed proteome quantification

Por Hebert, Alexander S, Merrill, Anna E, Bailey, Derek J, Still, Amelia J, Westphall, Michael S, Streiter, Eric R, Pagliarini, David J, Coon, Joshua J
Publicado em 2013

Amine-reactive Neutron-encoded Labels for Highly Plexed Proteomic Quantitation

Por Hebert, Alexander S., Merrill, Anna E., Stefely, Jonathan A., Bailey, Derek J., Wenger, Craig D., Westphall, Michael S., Pagliarini, David J., Coon, Joshua J.
Publicado em 2013

Instant spectral assignment for advanced decision tree-driven mass spectrometry

Por Bailey, Derek J., Rose, Christopher M., McAlister, Graeme C., Brumbaugh, Justin, Yu, Pengzhi, Wenger, Craig D., Westphall, Michael S., Thomson, James A., Coon, Joshua J.
Publicado em 2012

The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD)

Por Riley, Nicholas M., Rush, Matthew J. P., Rose, Christopher M., Richards, Alicia L., Kwiecien, Nicholas W., Bailey, Derek J., Hebert, Alexander S., Westphall, Michael S., Coon, Joshua J.
Publicado no Mol Cell Proteomics (2015)

A Proteogenomic Survey of the Medicago truncatula Genome

Por Volkening, Jeremy D., Bailey, Derek J., Rose, Christopher M., Grimsrud, Paul A., Howes-Podoll, Maegen, Venkateshwaran, Muthusubramanian, Westphall, Michael S., Ané, Jean-Michel, Coon, Joshua J., Sussman, Michael R.
Publicado em 2012

NeuCode Labels for Relative Protein Quantification

Por Merrill, Anna E., Hebert, Alexander S., MacGilvray, Matthew E., Rose, Christopher M., Bailey, Derek J., Bradley, Joel C., Wood, William W., El Masri, Marwan, Westphall, Michael S., Gasch, Audrey P., Coon, Joshua J.
Publicado em 2014

Proteomic and phosphoproteomic comparison of human ES and iPS cells

Por Phanstiel, Douglas H., Brumbaugh, Justin, Wenger, Craig D., Tian, Shulan, Probasco, Mitchell D., Bailey, Derek J., Swaney, Danielle L., Tervo, Mark A., Bolin, Jennifer M., Ruotti, Victor, Stewart, Ron, Thomson, James A., Coon, Joshua J.
Publicado em 2011

A quantitative map of the liver mitochondrial phosphoproteome reveals post-translational control of ketogenesis

Por Grimsrud, Paul A., Carson, Joshua J., Hebert, Alex S., Hubler, Shane L., Niemi, Natalie M., Bailey, Derek J., Jochem, Adam, Stapleton, Donald S., Keller, Mark P., Westphall, Michael S., Yandell, Brian S., Attie, Alan D., Coon, Joshua J., Pagliarini, David J.
Publicado em 2012

Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics∥

Por Rhoads, Timothy W., Rose, Christopher M., Bailey, Derek J., Riley, Nicholas M., Molden, Rosalynn C., Nestler, Amelia J., Merrill, Anna E., Smith, Lloyd M., Hebert, Alexander S., Westphall, Michael S., Pagliarini, David J., Garcia, Benjamin A., Coon, Joshua J.
Publicado em 2014

Rapid Phosphoproteomic and Transcriptomic Changes in the Rhizobia-legume Symbiosis

Por Rose, Christopher M., Venkateshwaran, Muthusubramanian, Volkening, Jeremy D., Grimsrud, Paul A., Maeda, Junko, Bailey, Derek J., Park, Kwanghyun, Howes-Podoll, Maegen, den Os, Désirée, Yeun, Li Huey, Westphall, Michael S., Sussman, Michael R., Ané, Jean-Michel, Coon, Joshua J.
Publicado em 2012

Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome

Por Hebert, Alexander S., Dittenhafer-Reed, Kristin E., Yu, Wei, Bailey, Derek J., Selen, Ebru Selin, Boersma, Melissa D., Carson, Joshua J., Tonelli, Marco, Balloon, Allison, Higbee, Alan J., Westphall, Michael S., Pagliarini, David J., Prolla, Tomas A., Assadi-Porter, Fariba, Roy, Sushmita, Denu, John M., Coon, Joshua J.
Publicado em 2012