Positive selection for unpreferred codon usage in eukaryotic genomes

door Neafsey, Daniel E, Galagan, James E
Gepubliceerd in 2007

Conserved Secondary Structures in Aspergillus

door McGuire, Abigail Manson, Galagan, James E.
Gepubliceerd in 2008

Resource Competition May Lead to Effective Treatment of Antibiotic Resistant Infections

door Gomes, Antonio L. C., Galagan, James E., Segrè, Daniel
Gepubliceerd in 2013

Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis

door Garay, Christopher D., Dreyfuss, Jonathan M., Galagan, James E.
Gepubliceerd in BMC Syst Biol (2015)

Mechanisms of intron gain and loss in Cryptococcus

door Sharpton, Thomas J, Neafsey, Daniel E, Galagan, James E, Taylor, John W
Gepubliceerd in 2008

A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

door Lun, Desmond S, Sherrid, Ashley, Weiner, Brian, Sherman, David R, Galagan, James E
Gepubliceerd in 2009

A Förster Resonance Energy Transfer-Based Ratiometric Sensor with the Allosteric Transcription Factor TetR

door Nguyen, Thuy T., Chern, Margaret, Baer, R C., Galagan, James, Dennis, Allison M.
Gepubliceerd in Small (2020)

Patterns of Intron Gain and Loss in Fungi

door Nielsen, Cydney B, Friedman, Brad, Birren, Bruce, Burge, Christopher B, Galagan, James E
Gepubliceerd in 2004

Cross-kingdom patterns of alternative splicing and splice recognition

door McGuire, Abigail M, Pearson, Matthew D, Neafsey, Daniel E, Galagan, James E
Gepubliceerd in 2008

GenomeView: a next-generation genome browser

door Abeel, Thomas, Van Parys, Thomas, Saeys, Yvan, Galagan, James, Van de Peer, Yves
Gepubliceerd in 2012

How accurate can genetic predictions be?

door Dreyfuss, Jonathan M, Levner, Daniel, Galagan, James E, Church, George M, Ramoni, Marco F
Gepubliceerd in 2012

Transcription Factor Based Small Molecule Sensing with a Rapid Cell Phone Enabled Fluorescent Bead Assay

door Chern, Margaret, Garden, Padric M., Baer, R C., Galagan, James E., Dennis, Allison M.
Gepubliceerd in Angew Chem Int Ed Engl (2020)

Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models

door Brandes, Aaron, Lun, Desmond S., Ip, Kuhn, Zucker, Jeremy, Colijn, Caroline, Weiner, Brian, Galagan, James E.
Gepubliceerd in 2012

Correction: Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models

door Brandes, Aaron, Lun, Desmond S., Ip, Kuhn, Zucker, Jeremy, Colijn, Caroline, Weiner, Brian, Galagan, James E.
Gepubliceerd in 2012

Conrad: Gene prediction using conditional random fields

door DeCaprio, David, Vinson, Jade P., Pearson, Matthew D., Montgomery, Philip, Doherty, Matthew, Galagan, James E.
Gepubliceerd in 2007

Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction

door Gomes, Antonio L.C., Abeel, Thomas, Peterson, Matthew, Azizi, Elham, Lyubetskaya, Anna, Carvalho, Luís, Galagan, James
Gepubliceerd in 2014

Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM

door Dreyfuss, Jonathan M., Zucker, Jeremy D., Hood, Heather M., Ocasio, Linda R., Sachs, Matthew S., Galagan, James E.
Gepubliceerd in 2013

Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis

door Krueger, Andrew S., Munck, Christian, Dantas, Gautam, Church, George M., Galagan, James, Lehár, Joseph, Sommer, Morten O. A.
Gepubliceerd in PLoS One (2016)

Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

door Comas, Iñaki, Chakravartti, Jaidip, Small, Peter M., Galagan, James, Niemann, Stefan, Kremer, Kristin, Ernst, Joel D., Gagneux, Sebastien
Gepubliceerd in 2010

Whole-genome sequencing of rifampicin-resistant M. tuberculosis strains identifies compensatory mutations in RNA polymerase

door Comas, Iñaki, Borrell, Sonia, Roetzer, Andreas, Rose, Graham, Malla, Bijaya, Kato-Maeda, Midori, Galagan, James, Niemann, Stefan, Gagneux, Sebastien
Gepubliceerd in 2011