Positive selection for unpreferred codon usage in eukaryotic genomes

od Neafsey, Daniel E, Galagan, James E
Wydane 2007

Conserved Secondary Structures in Aspergillus

od McGuire, Abigail Manson, Galagan, James E.
Wydane 2008

Resource Competition May Lead to Effective Treatment of Antibiotic Resistant Infections

od Gomes, Antonio L. C., Galagan, James E., Segrè, Daniel
Wydane 2013

Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis

od Garay, Christopher D., Dreyfuss, Jonathan M., Galagan, James E.
Wydane w BMC Syst Biol (2015)

Mechanisms of intron gain and loss in Cryptococcus

od Sharpton, Thomas J, Neafsey, Daniel E, Galagan, James E, Taylor, John W
Wydane 2008

A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

od Lun, Desmond S, Sherrid, Ashley, Weiner, Brian, Sherman, David R, Galagan, James E
Wydane 2009

Patterns of Intron Gain and Loss in Fungi

od Nielsen, Cydney B, Friedman, Brad, Birren, Bruce, Burge, Christopher B, Galagan, James E
Wydane 2004

Cross-kingdom patterns of alternative splicing and splice recognition

od McGuire, Abigail M, Pearson, Matthew D, Neafsey, Daniel E, Galagan, James E
Wydane 2008

How accurate can genetic predictions be?

od Dreyfuss, Jonathan M, Levner, Daniel, Galagan, James E, Church, George M, Ramoni, Marco F
Wydane 2012

Transcription Factor Based Small Molecule Sensing with a Rapid Cell Phone Enabled Fluorescent Bead Assay

od Chern, Margaret, Garden, Padric M., Baer, R C., Galagan, James E., Dennis, Allison M.
Wydane w Angew Chem Int Ed Engl (2020)

Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models

od Brandes, Aaron, Lun, Desmond S., Ip, Kuhn, Zucker, Jeremy, Colijn, Caroline, Weiner, Brian, Galagan, James E.
Wydane 2012

Correction: Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models

od Brandes, Aaron, Lun, Desmond S., Ip, Kuhn, Zucker, Jeremy, Colijn, Caroline, Weiner, Brian, Galagan, James E.
Wydane 2012

Conrad: Gene prediction using conditional random fields

od DeCaprio, David, Vinson, Jade P., Pearson, Matthew D., Montgomery, Philip, Doherty, Matthew, Galagan, James E.
Wydane 2007

Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM

od Dreyfuss, Jonathan M., Zucker, Jeremy D., Hood, Heather M., Ocasio, Linda R., Sachs, Matthew S., Galagan, James E.
Wydane 2013

Large-scale identification of genetic design strategies using local search

od Lun, Desmond S, Rockwell, Graham, Guido, Nicholas J, Baym, Michael, Kelner, Jonathan A, Berger, Bonnie, Galagan, James E, Church, George M
Wydane 2009

Role of intragenic binding of cAMP responsive protein (CRP) in regulation of the succinate dehydrogenase genes Rv0249c-Rv0247c in TB complex mycobacteria

od Knapp, Gwendowlyn S., Lyubetskaya, Anna, Peterson, Matthew W., Gomes, Antonio L.C., Ma, Zhuo, Galagan, James E., McDonough, Kathleen A.
Wydane w Nucleic Acids Res (2015)

Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production

od Colijn, Caroline, Brandes, Aaron, Zucker, Jeremy, Lun, Desmond S., Weiner, Brian, Farhat, Maha R., Cheng, Tan-Yun, Moody, D. Branch, Murray, Megan, Galagan, James E.
Wydane 2009

Characterization of a cAMP responsive transcription factor, Cmr (Rv1675c), in TB complex mycobacteria reveals overlap with the DosR (DevR) dormancy regulon

od Ranganathan, Sridevi, Bai, Guangchun, Lyubetskaya, Anna, Knapp, Gwendowlyn S., Peterson, Matthew W., Gazdik, Michaela, C. Gomes, Antonio L., Galagan, James E., McDonough, Kathleen A.
Wydane w Nucleic Acids Res (2016)

Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics

od Manson, Abigail L., Abeel, Thomas, Galagan, James E., Sundaramurthi, Jagadish Chandrabose, Salazar, Alex, Gehrmann, Thies, Shanmugam, Siva Kumar, Palaniyandi, Kannan, Narayanan, Sujatha, Swaminathan, Soumya, Earl, Ashlee M.
Wydane w Clin Infect Dis (2017)

Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria

od Wu, Xiaolin, Cao, Bo, Aquino, Patricia, Chiu, Tsu-Pei, Chen, Chao, Jiang, Susu, Deng, Zixin, Chen, Shi, Rohs, Remo, Wang, Lianrong, Galagan, James E., Dedon, Peter C.
Wydane w Proc Natl Acad Sci U S A (2020)