Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions

ανά Hvidsten, Torgeir R., Kryshtafovych, Andriy, Fidelis, Krzysztof
Τόπος έκδοσης Proteins (2009)

A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation

ανά Street, Nathaniel Robert, Jansson, Stefan, Hvidsten, Torgeir R
Έκδοση 2011

ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa

ανά Netotea, Sergiu, Sundell, David, Street, Nathaniel R, Hvidsten, Torgeir R
Έκδοση 2014

Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering

ανά Freyhult, Eva, Landfors, Mattias, Önskog, Jenny, Hvidsten, Torgeir R, Rydén, Patrik
Έκδοση 2010

Classification of microarrays; synergistic effects between normalization, gene selection and machine learning

ανά Önskog, Jenny, Freyhult, Eva, Landfors, Mattias, Rydén, Patrik, Hvidsten, Torgeir R
Έκδοση 2011

Synergy: A Web Resource for Exploring Gene Regulation in Synechocystis sp. PCC6803

ανά Mähler, Niklas, Cheregi, Otilia, Funk, Christiane, Netotea, Sergiu, Hvidsten, Torgeir R.
Τόπος έκδοσης PLoS One (2014)

Predicting Gene Ontology Biological Process From Temporal Gene Expression Patterns

ανά Lægreid, Astrid, Hvidsten, Torgeir R., Midelfart, Herman, Komorowski, Jan, Sandvik, Arne K.
Έκδοση 2003

Extracting functional trends from whole genome duplication events using comparative genomics

ανά Hermansen, Russell A., Hvidsten, Torgeir R., Sandve, Simen Rød, Liberles, David A.
Τόπος έκδοσης Biol Proced Online (2016)

Evolution of Cold Acclimation and Its Role in Niche Transition in the Temperate Grass Subfamily Pooideae

ανά Schubert, Marian, Grønvold, Lars, Sandve, Simen R., Hvidsten, Torgeir R., Fjellheim, Siri
Τόπος έκδοσης Plant Physiol (2019)

Discovering regulatory binding-site modules using rule-based learning

ανά Hvidsten, Torgeir R., Wilczyński, Bartosz, Kryshtafovych, Andriy, Tiuryn, Jerzy, Komorowski, Jan, Fidelis, Krzysztof
Έκδοση 2005

Using local gene expression similarities to discover regulatory binding site modules

ανά Wilczyński, Bartek, Hvidsten, Torgeir R, Kryshtafovych, Andriy, Tiuryn, Jerzy, Komorowski, Jan, Fidelis, Krzysztof
Έκδοση 2006

Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors

ανά Andersson, Claes R, Hvidsten, Torgeir R, Isaksson, Anders, Gustafsson, Mats G, Komorowski, Jan
Έκδοση 2007

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts

ανά Björkholm, Patrik, Daniluk, Pawel, Kryshtafovych, Andriy, Fidelis, Krzysztof, Andersson, Robin, Hvidsten, Torgeir R.
Έκδοση 2009

A Comprehensive Analysis of the Structure-Function Relationship in Proteins Based on Local Structure Similarity

ανά Hvidsten, Torgeir R., Lægreid, Astrid, Kryshtafovych, Andriy, Andersson, Gunnar, Fidelis, Krzysztof, Komorowski, Jan
Έκδοση 2009

Transkingdom network analysis provides insight into host-microbiome interactions in Atlantic salmon

ανά Strand, Marius A., Jin, Yang, Sandve, Simen R., Pope, Phil B., Hvidsten, Torgeir R.
Τόπος έκδοσης Comput Struct Biotechnol J (2021)

Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development

ανά Obudulu, Ogonna, Bygdell, Joakim, Sundberg, Björn, Moritz, Thomas, Hvidsten, Torgeir R., Trygg, Johan, Wingsle, Gunnar
Τόπος έκδοσης BMC Genomics (2016)

NorWood: a gene expression resource for evo‐devo studies of conifer wood development

ανά Jokipii‐Lukkari, Soile, Sundell, David, Nilsson, Ove, Hvidsten, Torgeir R., Street, Nathaniel R., Tuominen, Hannele
Τόπος έκδοσης New Phytol (2017)

Activity–dormancy transition in the cambial meristem involves stage-specific modulation of auxin response in hybrid aspen

ανά Baba, Kyoko, Karlberg, Anna, Schmidt, Julien, Schrader, Jarmo, Hvidsten, Torgeir R., Bako, Laszlo, Bhalerao, Rishikesh P.
Έκδοση 2011

Gene co-expression network connectivity is an important determinant of selective constraint

ανά Mähler, Niklas, Wang, Jing, Terebieniec, Barbara K., Ingvarsson, Pär K., Street, Nathaniel R., Hvidsten, Torgeir R.
Τόπος έκδοσης PLoS Genet (2017)

SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes

ανά Mulugeta, Teshome Dagne, Nome, Torfinn, To, Thu-Hien, Gundappa, Manu Kumar, Macqueen, Daniel J., Våge, Dag Inge, Sandve, Simen Rød, Hvidsten, Torgeir R.
Τόπος έκδοσης BMC Genomics (2019)