Estimating the size of the solution space of metabolic networks

по Braunstein, Alfredo, Mulet, Roberto, Pagnani, Andrea
Опубликовано 2008

Modelling Competing Endogenous RNA Networks

по Bosia, Carla, Pagnani, Andrea, Zecchina, Riccardo
Опубликовано 2013

An analytic approximation of the feasible space of metabolic networks

по Braunstein, Alfredo, Muntoni, Anna Paola, Pagnani, Andrea
Опубликовано в: Nat Commun (2017)

Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon

по Feinauer, Christoph, Szurmant, Hendrik, Weigt, Martin, Pagnani, Andrea
Опубликовано в: PLoS One (2016)

Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity

по Asti, Lorenzo, Uguzzoni, Guido, Marcatili, Paolo, Pagnani, Andrea
Опубликовано в: PLoS Comput Biol (2016)

A common root for coevolution and substitution rate variability in protein sequence evolution

по Rizzato, Francesca, Zamuner, Stefano, Pagnani, Andrea, Laio, Alessandro
Опубликовано в: Sci Rep (2019)

Improving Contact Prediction along Three Dimensions

по Feinauer, Christoph, Skwark, Marcin J., Pagnani, Andrea, Aurell, Erik
Опубликовано 2014

ceRNA crosstalk stabilizes protein expression and affects the correlation pattern of interacting proteins

по Martirosyan, Araks, De Martino, Andrea, Pagnani, Andrea, Marinari, Enzo
Опубликовано в: Sci Rep (2017)

The intrinsic dimension of protein sequence evolution

по Facco, Elena, Pagnani, Andrea, Russo, Elena Tea, Laio, Alessandro
Опубликовано в: PLoS Comput Biol (2019)

Unsupervised Inference of Protein Fitness Landscape from Deep Mutational Scan

по Fernandez-de-Cossio-Diaz, Jorge, Uguzzoni, Guido, Pagnani, Andrea
Опубликовано в: Mol Biol Evol (2020)

Identifying All Moiety Conservation Laws in Genome-Scale Metabolic Networks

по De Martino, Andrea, De Martino, Daniele, Mulet, Roberto, Pagnani, Andrea
Опубликовано 2014

Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis

по Gueudré, Thomas, Baldassi, Carlo, Zamparo, Marco, Weigt, Martin, Pagnani, Andrea
Опубликовано в: Proc Natl Acad Sci U S A (2016)

Inverse problem for multi-body interaction of nonlinear waves

по Marruzzo, Alessia, Tyagi, Payal, Antenucci, Fabrizio, Pagnani, Andrea, Leuzzi, Luca
Опубликовано в: Sci Rep (2017)

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach

по Bailly-Bechet, Marc, Braunstein, Alfredo, Pagnani, Andrea, Weigt, Martin, Zecchina, Riccardo
Опубликовано 2010

Information theoretic and machine learning approaches to quantify non-linear visual feature interaction underlying visual object recognition

по Alemi-Neissi, Alireza, Baldassi, Carlo, Braunstein, Alfredo, Pagnani, Andrea, Zecchina, Riccardo, Zoccolan, Davide
Опубликовано 2012

Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners

по Baldassi, Carlo, Zamparo, Marco, Feinauer, Christoph, Procaccini, Andrea, Zecchina, Riccardo, Weigt, Martin, Pagnani, Andrea
Опубликовано 2014

Protein 3D Structure Computed from Evolutionary Sequence Variation

по Marks, Debora S., Colwell, Lucy J., Sheridan, Robert, Hopf, Thomas A., Pagnani, Andrea, Zecchina, Riccardo, Sander, Chris
Опубликовано 2011

SHARING INFORMATION TO RECONSTRUCT PATIENT-SPECIFIC PATHWAYS IN HETEROGENEOUS DISEASES

по GITTER, ANTHONY, BRAUNSTEIN, ALFREDO, PAGNANI, ANDREA, BALDASSI, CARLO, BORGS, CHRISTIAN, CHAYES, JENNIFER, ZECCHINA, RICCARDO, FRAENKEL, ERNEST
Опубликовано 2014

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells

по Neri, Francesco, Incarnato, Danny, Krepelova, Anna, Rapelli, Stefania, Pagnani, Andrea, Zecchina, Riccardo, Parlato, Caterina, Oliviero, Salvatore
Опубликовано 2013

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

по Tuncbag, Nurcan, Braunstein, Alfredo, Pagnani, Andrea, Huang, Shao-Shan Carol, Chayes, Jennifer, Borgs, Christian, Zecchina, Riccardo, Fraenkel, Ernest
Опубликовано 2013