High-throughput whole-genome sequencing of E14 mouse embryonic stem cells

Por Incarnato, Danny, Neri, Francesco
Publicado no Genom Data (2014)

DNA methylation and demethylation dynamics

Por Neri, Francesco, Incarnato, Danny, Oliviero, Salvatore
Publicado no Oncotarget (2015)

MREdictor: a two-step dynamic interaction model that accounts for mRNA accessibility and Pumilio binding accurately predicts microRNA targets

Por Incarnato, Danny, Neri, Francesco, Diamanti, Daniela, Oliviero, Salvatore
Publicado em 2013

Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome

Por Incarnato, Danny, Neri, Francesco, Anselmi, Francesca, Oliviero, Salvatore
Publicado no Genome Biol (2014)

RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications

Por Incarnato, Danny, Morandi, Edoardo, Simon, Lisa Marie, Oliviero, Salvatore
Publicado no Nucleic Acids Res (2018)

In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding

Por Incarnato, Danny, Morandi, Edoardo, Anselmi, Francesca, Simon, Lisa M., Basile, Giulia, Oliviero, Salvatore
Publicado no Nucleic Acids Res (2017)

Whole gene expression profile in blood reveals multiple pathways deregulation in R6/2 mouse model

Por Diamanti, Daniela, Mori, Elisa, Incarnato, Danny, Malusa, Federico, Fondelli, Costanza, Magnoni, Letizia, Pollio, Giuseppe
Publicado em 2013

Role of CD133 Molecule in Wnt Response and Renal Repair

Por Brossa, Alessia, Papadimitriou, Elli, Collino, Federica, Incarnato, Danny, Oliviero, Salvatore, Camussi, Giovanni, Bussolati, Benedetta
Publicado no Stem Cells Transl Med (2018)

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells

Por Neri, Francesco, Incarnato, Danny, Krepelova, Anna, Rapelli, Stefania, Pagnani, Andrea, Zecchina, Riccardo, Parlato, Caterina, Oliviero, Salvatore
Publicado em 2013

Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fish Leucoraja ocellata (Rajidae)

Por Lighten, Jackie, Incarnato, Danny, Ward, Ben J., van Oosterhout, Cock, Bradbury, Ian, Hanson, Mark, Bentzen, Paul
Publicado no R Soc Open Sci (2016)

High-throughput single-base resolution mapping of RNA 2΄-O-methylated residues

Por Incarnato, Danny, Anselmi, Francesca, Morandi, Edoardo, Neri, Francesco, Maldotti, Mara, Rapelli, Stefania, Parlato, Caterina, Basile, Giulia, Oliviero, Salvatore
Publicado no Nucleic Acids Res (2017)

In vivo analysis of influenza A mRNA secondary structures identifies critical regulatory motifs

Por Simon, Lisa Marie, Morandi, Edoardo, Luganini, Anna, Gribaudo, Giorgio, Martinez-Sobrido, Luis, Turner, Douglas H, Oliviero, Salvatore, Incarnato, Danny
Publicado no Nucleic Acids Res (2019)

TET1 is controlled by pluripotency-associated factors in ESCs and downmodulated by PRC2 in differentiated cells and tissues

Por Neri, Francesco, Incarnato, Danny, Krepelova, Anna, Dettori, Daniela, Rapelli, Stefania, Maldotti, Mara, Parlato, Caterina, Anselmi, Francesca, Galvagni, Federico, Oliviero, Salvatore
Publicado no Nucleic Acids Res (2015)

Soluble Neuregulin1 Down-Regulates Myelination Genes in Schwann Cells

Por El Soury, Marwa, Fornasari, Benedetta E., Morano, Michela, Grazio, Elio, Ronchi, Giulia, Incarnato, Danny, Giacobini, Mario, Geuna, Stefano, Provero, Paolo, Gambarotta, Giovanna
Publicado no Front Mol Neurosci (2018)

FOSL1 Controls the Assembly of Endothelial Cells into Capillary Tubes by Direct Repression of αv and β3 Integrin Transcription

Por Evellin, Sandrine, Galvagni, Federico, Zippo, Alessio, Neri, Francesco, Orlandini, Maurizio, Incarnato, Danny, Dettori, Daniela, Neubauer, Stefanie, Kessler, Horst, Wagner, Erwin F., Oliviero, Salvatore
Publicado em 2013

AKI Recovery Induced by Mesenchymal Stromal Cell-Derived Extracellular Vesicles Carrying MicroRNAs

Por Collino, Federica, Bruno, Stefania, Incarnato, Danny, Dettori, Daniela, Neri, Francesco, Provero, Paolo, Pomatto, Margherita, Oliviero, Salvatore, Tetta, Ciro, Quesenberry, Peter J., Camussi, Giovanni
Publicado no J Am Soc Nephrol (2015)

MicroRNAs-143 and -145 induce epithelial to mesenchymal transition and modulate the expression of junction proteins

Por Avalle, Lidia, Incarnato, Danny, Savino, Aurora, Gai, Marta, Marino, Francesca, Pensa, Sara, Barbieri, Isaia, Stadler, Michael B, Provero, Paolo, Oliviero, Salvatore, Poli, Valeria
Publicado no Cell Death Differ (2017)

The transcriptional regulator ZNF398 mediates pluripotency and epithelial character downstream of TGF-beta in human PSCs

Por Zorzan, Irene, Pellegrini, Marco, Arboit, Mattia, Incarnato, Danny, Maldotti, Mara, Forcato, Mattia, Tagliazucchi, Guidantonio Malagoli, Carbognin, Elena, Montagner, Marco, Oliviero, Salvatore, Martello, Graziano
Publicado no Nat Commun (2020)

HaTSPiL: A modular pipeline for high-throughput sequencing data analysis

Por Morandi, Edoardo, Cereda, Matteo, Incarnato, Danny, Parlato, Caterina, Basile, Giulia, Anselmi, Francesca, Lauria, Andrea, Simon, Lisa Marie, Laurence Polignano, Isabelle, Arruga, Francesca, Deaglio, Silvia, Tirtei, Elisa, Fagioli, Franca, Oliviero, Salvatore
Publicado no PLoS One (2019)

Extracellular nicotinate phosphoribosyltransferase binds Toll like receptor 4 and mediates inflammation

Por Managò, Antonella, Audrito, Valentina, Mazzola, Francesca, Sorci, Leonardo, Gaudino, Federica, Gizzi, Katiuscia, Vitale, Nicoletta, Incarnato, Danny, Minazzato, Gabriele, Ianniello, Alice, Varriale, Antonio, D’Auria, Sabato, Mengozzi, Giulio, Politano, Gianfranco, Oliviero, Salvatore, Raffaelli, Nadia, Deaglio, Silvia
Publicado no Nat Commun (2019)