Hi-C analysis: from data generation to integration

by Pal, Koustav, Forcato, Mattia, Ferrari, Francesco
Published in Biophys Rev (2018)

Computational methods for the integrative analysis of single-cell data

by Forcato, Mattia, Romano, Oriana, Bicciato, Silvio
Published in Brief Bioinform (2020)

GDA, a web-based tool for Genomics and Drugs integrated analysis

by Caroli, Jimmy, Sorrentino, Giovanni, Forcato, Mattia, Del Sal, Giannino, Bicciato, Silvio
Published in Nucleic Acids Res (2018)

Comparison of computational methods for Hi-C data analysis

by Forcato, Mattia, Nicoletti, Chiara, Pal, Koustav, Livi, Carmen Maria, Ferrari, Francesco, Bicciato, Silvio
Published in Nat Methods (2017)

A multifactorial ‘Consensus Signature’ by in silico analysis to predict response to neoadjuvant anthracycline-based chemotherapy in triple-negative breast cancer

by Turner, Natalie, Forcato, Mattia, Nuzzo, Simona, Malorni, Luca, Bicciato, Silvio, Di Leo, Angelo
Published in NPJ Breast Cancer (2015)

Dynamic Effects of Topoisomerase I Inhibition on R-Loops and Short Transcripts at Active Promoters

by Marinello, Jessica, Bertoncini, Stefania, Aloisi, Iris, Cristini, Agnese, Malagoli Tagliazucchi, Guidantonio, Forcato, Mattia, Sordet, Olivier, Capranico, Giovanni
Published in PLoS One (2016)

Genome-wide association between YAP/TAZ/TEAD and AP-1 at enhancers drives oncogenic growth

by Zanconato, Francesca, Forcato, Mattia, Battilana, Giusy, Azzolin, Luca, Quaranta, Erika, Bodega, Beatrice, Rosato, Antonio, Bicciato, Silvio, Cordenonsi, Michelangelo, Piccolo, Stefano
Published in Nat Cell Biol (2015)

Transcriptional profiling of human bronchial epithelial cell BEAS-2B exposed to diesel and biomass ultrafine particles

by Grilli, Andrea, Bengalli, Rossella, Longhin, Eleonora, Capasso, Laura, Proverbio, Maria Carla, Forcato, Mattia, Bicciato, Silvio, Gualtieri, Maurizio, Battaglia, Cristina, Camatini, Marina
Published in BMC Genomics (2018)

ETV7 regulates breast cancer stem-like cell features by repressing IFN-response genes

by Pezzè, Laura, Meškytė, Erna Marija, Forcato, Mattia, Pontalti, Stefano, Badowska, Kalina Aleksandra, Rizzotto, Dario, Skvortsova, Ira-Ida, Bicciato, Silvio, Ciribilli, Yari
Published in Cell Death Dis (2021)

Global chromatin conformation differences in the Drosophila dosage compensated chromosome X

by Pal, Koustav, Forcato, Mattia, Jost, Daniel, Sexton, Thomas, Vaillant, Cédric, Salviato, Elisa, Mazza, Emilia Maria Cristina, Lugli, Enrico, Cavalli, Giacomo, Ferrari, Francesco
Published in Nat Commun (2019)

The transcriptional regulator ZNF398 mediates pluripotency and epithelial character downstream of TGF-beta in human PSCs

by Zorzan, Irene, Pellegrini, Marco, Arboit, Mattia, Incarnato, Danny, Maldotti, Mara, Forcato, Mattia, Tagliazucchi, Guidantonio Malagoli, Carbognin, Elena, Montagner, Marco, Oliviero, Salvatore, Martello, Graziano
Published in Nat Commun (2020)

Aerobic glycolysis tunes YAP/TAZ transcriptional activity

by Enzo, Elena, Santinon, Giulia, Pocaterra, Arianna, Aragona, Mariaceleste, Bresolin, Silvia, Forcato, Mattia, Grifoni, Daniela, Pession, Annalisa, Zanconato, Francesca, Guzzo, Giulia, Bicciato, Silvio, Dupont, Sirio
Published in EMBO J (2015)

EphB6 Regulates TFEB-Lysosomal Pathway and Survival of Disseminated Indolent Breast Cancer Cells

by Zangrossi, Manuela, Romani, Patrizia, Chakravarty, Probir, Ratcliffe, Colin D.H., Hooper, Steven, Dori, Martina, Forcato, Mattia, Bicciato, Silvio, Dupont, Sirio, Sahai, Erik, Montagner, Marco
Published in Cancers (Basel) (2021)

MCM7 and its hosted miR-25, 93 and 106b cluster elicit YAP/TAZ oncogenic activity in lung cancer

by Lo Sardo, Federica, Forcato, Mattia, Sacconi, Andrea, Capaci, Valeria, Zanconato, Francesca, Di Agostino, Silvia, Del Sal, Giannino, Pandolfi, Pier Paolo, Strano, Sabrina, Bicciato, Silvio, Blandino, Giovanni
Published in Carcinogenesis (2017)

Hmgb3 Is Regulated by MicroRNA-206 during Muscle Regeneration

by Maciotta, Simona, Meregalli, Mirella, Cassinelli, Letizia, Parolini, Daniele, Farini, Andrea, Fraro, Giulia Del, Gandolfi, Francesco, Forcato, Mattia, Ferrari, Sergio, Gabellini, Davide, Bicciato, Silvio, Cossu, Giulio, Torrente, Yvan
Published 2012

Glucocorticoid receptor signalling activates YAP in breast cancer

by Sorrentino, Giovanni, Ruggeri, Naomi, Zannini, Alessandro, Ingallina, Eleonora, Bertolio, Rebecca, Marotta, Carolina, Neri, Carmelo, Cappuzzello, Elisa, Forcato, Mattia, Rosato, Antonio, Mano, Miguel, Bicciato, Silvio, Del Sal, Giannino
Published in Nat Commun (2017)

The calcineurin-NFAT pathway controls activity-dependent circadian gene expression in slow skeletal muscle

by Dyar, Kenneth A., Ciciliot, Stefano, Tagliazucchi, Guidantonio Malagoli, Pallafacchina, Giorgia, Tothova, Jana, Argentini, Carla, Agatea, Lisa, Abraham, Reimar, Ahdesmäki, Miika, Forcato, Mattia, Bicciato, Silvio, Schiaffino, Stefano, Blaauw, Bert
Published in Mol Metab (2015)

Unravelling Heterogeneity of Amplified Human Amniotic Fluid Stem Cells Sub-Populations

by Casciaro, Francesca, Zia, Silvia, Forcato, Mattia, Zavatti, Manuela, Beretti, Francesca, Bertucci, Emma, Zattoni, Andrea, Reschiglian, Pierluigi, Alviano, Francesco, Bonsi, Laura, Follo, Matilde Yung, Demaria, Marco, Roda, Barbara, Maraldi, Tullia
Published in Cells (2021)

Single-keratinocyte transcriptomic analyses identify different clonal types and proliferative potential mediated by FOXM1 in human epidermal stem cells

by Enzo, Elena, Secone Seconetti, Alessia, Forcato, Mattia, Tenedini, Elena, Polito, Maria Pia, Sala, Irene, Carulli, Sonia, Contin, Roberta, Peano, Clelia, Tagliafico, Enrico, Bicciato, Silvio, Bondanza, Sergio, De Luca, Michele
Published in Nat Commun (2021)

The mutant p53‐ID4 complex controls VEGFA isoforms by recruiting lncRNA MALAT1

by Pruszko, Magdalena, Milano, Elisa, Forcato, Mattia, Donzelli, Sara, Ganci, Federica, Di Agostino, Silvia, De Panfilis, Simone, Fazi, Francesco, Bates, David O, Bicciato, Silvio, Zylicz, Maciej, Zylicz, Alicja, Blandino, Giovanni, Fontemaggi, Giulia
Published in EMBO Rep (2017)