Integration of Bioinformatic Predictions and Experimental Data to Identify circRNA-miRNA Associations

by Dori, Martina, Bicciato, Silvio
Published in Genes (Basel) (2019)

Computational Methods for the Integrative Analysis of Genomics and Pharmacological Data

by Caroli, Jimmy, Dori, Martina, Bicciato, Silvio
Published in Front Oncol (2020)

Computational methods for the integrative analysis of single-cell data

by Forcato, Mattia, Romano, Oriana, Bicciato, Silvio
Published in Brief Bioinform (2020)

Impact of probe annotation on the integration of miRNA–mRNA expression profiles for miRNA target detection

by Sales, Gabriele, Coppe, Alessandro, Bicciato, Silvio, Bortoluzzi, Stefania, Romualdi, Chiara
Published 2010

Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review

by Lahti, Leo, Schäfer, Martin, Klein, Hans-Ulrich, Bicciato, Silvio, Dugas, Martin
Published 2013

GDA, a web-based tool for Genomics and Drugs integrated analysis

by Caroli, Jimmy, Sorrentino, Giovanni, Forcato, Mattia, Del Sal, Giannino, Bicciato, Silvio
Published in Nucleic Acids Res (2018)

Chromosome positioning in interphase nuclei of hematopoietic stem cell and myeloid precursor

by Lomiento, Mariana, Mammoli, Fabiana, Mazza, Emilia Maria Cristina, Bicciato, Silvio, Ferrari, Sergio
Published in Hematol Rep (2018)

Comparison of computational methods for Hi-C data analysis

by Forcato, Mattia, Nicoletti, Chiara, Pal, Koustav, Livi, Carmen Maria, Ferrari, Francesco, Bicciato, Silvio
Published in Nat Methods (2017)

A multifactorial ‘Consensus Signature’ by in silico analysis to predict response to neoadjuvant anthracycline-based chemotherapy in triple-negative breast cancer

by Turner, Natalie, Forcato, Mattia, Nuzzo, Simona, Malorni, Luca, Bicciato, Silvio, Di Leo, Angelo
Published in NPJ Breast Cancer (2015)

A-MADMAN: Annotation-based microarray data meta-analysis tool

by Bisognin, Andrea, Coppe, Alessandro, Ferrari, Francesco, Risso, Davide, Romualdi, Chiara, Bicciato, Silvio, Bortoluzzi, Stefania
Published 2009

UCbase 2.0: ultraconserved sequences database (2014 update)

by Lomonaco, Vincenzo, Martoglia, Riccardo, Mandreoli, Federica, Anderlucci, Laura, Emmett, Warren, Bicciato, Silvio, Taccioli, Cristian
Published 2014

Motif discovery in promoters of genes co-localized and co-expressed during myeloid cells differentiation

by Coppe, Alessandro, Ferrari, Francesco, Bisognin, Andrea, Danieli, Gian Antonio, Ferrari, Sergio, Bicciato, Silvio, Bortoluzzi, Stefania
Published 2009

Gene expression profiling of human fibrocytic myeloid-derived suppressor cells (f-MDSCs)

by Mazza, Emilia Maria Cristina, Zoso, Alessia, Mandruzzato, Susanna, Bronte, Vincenzo, Serafini, Paolo, Inverardi, Luca, Bicciato, Silvio
Published in Genom Data (2014)

dNTP metabolism links mechanical cues and YAP/TAZ to cell growth and oncogene‐induced senescence

by Santinon, Giulia, Brian, Irene, Pocaterra, Arianna, Romani, Patrizia, Franzolin, Elisa, Rampazzo, Chiara, Bicciato, Silvio, Dupont, Sirio
Published in EMBO J (2018)

Enzymatic Inactivation of Oxysterols in Breast Tumor Cells Constraints Metastasis Formation by Reprogramming the Metastatic Lung Microenvironment

by Moresco, Marta A., Raccosta, Laura, Corna, Gianfranca, Maggioni, Daniela, Soncini, Matias, Bicciato, Silvio, Doglioni, Claudio, Russo, Vincenzo
Published in Front Immunol (2018)

The Genome-Wide Impact of Nipblb Loss-of-Function on Zebrafish Gene Expression

by Spreafico, Marco, Mangano, Eleonora, Mazzola, Mara, Consolandi, Clarissa, Bordoni, Roberta, Battaglia, Cristina, Bicciato, Silvio, Marozzi, Anna, Pistocchi, Anna
Published in Int J Mol Sci (2020)

Genomic expression during human myelopoiesis

by Ferrari, Francesco, Bortoluzzi, Stefania, Coppe, Alessandro, Basso, Dario, Bicciato, Silvio, Zini, Roberta, Gemelli, Claudia, Danieli, Gian Antonio, Ferrari, Sergio
Published 2007

Microarray data mining using Bioconductor packages

by Nie, Haisheng, Neerincx, Pieter BT, Poel, Jan van der, Ferrari, Francesco, Bicciato, Silvio, Leunissen, Jack AM, Groenen, Martien AM
Published 2009

Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over-producing strain

by Peano, Clelia, Talà, Adelfia, Corti, Giorgio, Pasanisi, Daniela, Durante, Miriana, Mita, Giovanni, Bicciato, Silvio, De Bellis, Gianluca, Alifano, Pietro
Published 2012

MDP, a database linking drug response data to genomic information, identifies dasatinib and statins as a combinatorial strategy to inhibit YAP/TAZ in cancer cells

by Taccioli, Cristian, Sorrentino, Giovanni, Zannini, Alessandro, Caroli, Jimmy, Beneventano, Domenico, Anderlucci, Laura, Lolli, Marco, Bicciato, Silvio, Del Sal, Giannino
Published in Oncotarget (2015)