GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers

по Mermel, Craig H, Schumacher, Steven E, Hill, Barbara, Meyerson, Matthew L, Beroukhim, Rameen, Getz, Gad
Опубликовано 2011

Pan-Cancer Analysis Links PARK2 to BCL-XL-Dependent Control of Apoptosis

по Gong, Yongxing, Schumacher, Steven E., Wu, Wei H., Tang, Fanying, Beroukhim, Rameen, Chan, Timothy A.
Опубликовано в: Neoplasia (2016)

Genetic and Functional Studies Implicate HIF1α as a 14q Kidney Cancer Suppressor Gene

по Shen, Chuan, Beroukhim, Rameen, Schumacher, Steven E., Zhou, Jing, Chang, Michelle, Signoretti, Sabina, Kaelin, William G.
Опубликовано 2011

Somatic copy number alterations in gastric adenocarcinomas among Asian and Western patients

по Schumacher, Steven E., Shim, Byoung Yong, Corso, Giovanni, Ryu, Min-Hee, Kang, Yoon-Koo, Roviello, Franco, Saksena, Gordon, Peng, Shouyong, Shivdasani, Ramesh A., Bass, Adam J., Beroukhim, Rameen
Опубликовано в: PLoS One (2017)

Tumor suppressor genes that escape from X-inactivation contribute to cancer sex bias

по Dunford, Andrew, Weinstock, David M., Savova, Virginia, Schumacher, Steven E., Cleary, John P., Yoda, Akinori, Sullivan, Timothy J., Hess, Julian M., Gimelbrant, Alexander A., Beroukhim, Rameen, Lawrence, Michael S., Getz, Gad, Lane, Andrew A.
Опубликовано в: Nat Genet (2016)

Genomic and Functional Approaches to Understanding Cancer Aneuploidy

по Taylor, Alison M., Shih, Juliann, Ha, Gavin, Gao, Galen F., Zhang, Xiaoyang, Berger, Ashton C., Schumacher, Steven E., Wang, Chen, Hu, Hai, Liu, Jianfang, Lazar, Alexander J., Cherniack, Andrew D., Beroukhim, Rameen, Meyerson, Matthew
Опубликовано в: Cancer Cell (2018)

Patterns of somatic structural variation in human cancer genomes

по Li, Yilong, Roberts, Nicola D., Wala, Jeremiah A., Shapira, Ofer, Schumacher, Steven E., Kumar, Kiran, Khurana, Ekta, Waszak, Sebastian, Korbel, Jan O., Haber, James E., Imielinski, Marcin, Weischenfeldt, Joachim, Beroukhim, Rameen, Campbell, Peter J.
Опубликовано в: Nature (2020)

Pan-cancer genetic analysis identifies PARK2 as a master regulator of G1/S cyclins

по Gong, Yongxing, Zack, Travis Ian, Morris, Luc G T, Lin, Kan, Hukkelhoven, Ellen, Raheja, Radhika, Tan, I-Li, Turcan, Sevin, Veeriah, Selvaraju, Meng, Shasha, Viale, Agnes, Schumacher, Steven E, Palmedo, Perry, Beroukhim, Rameen, Chan, Timothy A
Опубликовано в: Nat Genet (2014)

MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism that Mimics the Role of Activated RAS in Malignancy

по Neupane, Manish, Clark, Allison P., Landini, Serena, Birkbak, Nicolai J., Eklund, Aron C., Lim, Elgene, Culhane, Aedin C., Barry, William T., Schumacher, Steven E., Beroukhim, Rameen, Szallasi, Zoltan, Vidal, Marc, Hill, David E., Silver, Daniel P.
Опубликовано в: Cancer Discov (2015)

ATARiS: Computational quantification of gene suppression phenotypes from multisample RNAi screens

по Shao, Diane D., Tsherniak, Aviad, Gopal, Shuba, Weir, Barbara A., Tamayo, Pablo, Stransky, Nicolas, Schumacher, Steven E., Zack, Travis I., Beroukhim, Rameen, Garraway, Levi A., Margolin, Adam A., Root, David E., Hahn, William C., Mesirov, Jill P.
Опубликовано 2013

Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth

по Holst, Frederik, Hoivik, Erling A., Gibson, William J., Taylor-Weiner, Amaro, Schumacher, Steven E., Asmann, Yan W., Grossmann, Patrick, Trovik, Jone, Necela, Brian M., Thompson, E. Aubrey, Meyerson, Matthew, Beroukhim, Rameen, Salvesen, Helga B., Cherniack, Andrew D.
Опубликовано в: Sci Rep (2016)

Corrigendum: Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth

по Holst, Frederik, Hoivik, Erling A., Gibson, William J., Taylor-Weiner, Amaro, Schumacher, Steven E., Asmann, Yan W., Grossmann, Patrick, Trovik, Jone, Necela, Brian M., Thompson, E. Aubrey, Meyerson, Matthew, Beroukhim, Rameen, Salvesen, Helga B., Cherniack, Andrew D.
Опубликовано в: Sci Rep (2016)

Corrigendum: Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth

по Holst, Frederik, Hoivik, Erling A., Gibson, William J., Taylor-Weiner, Amaro, Schumacher, Steven E., Asmann, Yan W., Grossmann, Patrick, Trovik, Jone, Necela, Brian M., Thompson, E. Aubrey, Meyerson, Matthew, Beroukhim, Rameen, Salvesen, Helga B., Cherniack, Andrew D.
Опубликовано в: Sci Rep (2017)

Exome sequencing of lymphomas from three dog breeds reveals somatic mutation patterns reflecting genetic background

по Elvers, Ingegerd, Turner-Maier, Jason, Swofford, Ross, Koltookian, Michele, Johnson, Jeremy, Stewart, Chip, Zhang, Cheng-Zhong, Schumacher, Steven E., Beroukhim, Rameen, Rosenberg, Mara, Thomas, Rachael, Mauceli, Evan, Getz, Gad, Palma, Federica Di, Modiano, Jaime F., Breen, Matthew, Lindblad-Toh, Kerstin, Alföldi, Jessica
Опубликовано в: Genome Res (2015)

EPT-20 CLINICAL TARGETED EXOME-BASED SEQUENCING IN COMBINATION WITH GENOME WIDE COPY NUMBER PROFILING: A CLIA CERTIFIED APPROACH FOR PRECISION MEDICINE IN 203 PEDIATRIC BRAIN TUMOR...

по Bandopadhayay, Pratiti, Ramkissoon, Shakti, Hwang, Jaeho, Ramkissoon, Lori, Dubuc, Adrian, Schumacher, Steven, Janeway, Katherine, Pinches, Nathan, Malkin, Hayley, Sinai, Claire, Manley, Peter, Wright, Karen, Filbin, Mariella, Goumnerova, Liliana, Alexandrescu, Sanda, Harris, Marian, Ligon, Azra, Kieran, Mark, Chi, Susan, Beroukhim, Rameen, Ligon, Keith
Опубликовано в: Neuro Oncol (2016)

Pan-cancer patterns of somatic copy-number alteration

по Zack, Travis I., Schumacher, Steven E., Carter, Scott L., Cherniack, Andrew D., Saksena, Gordon, Tabak, Barbara, Lawrence, Michael S., Zhang, Cheng-Zhong, Wala, Jeremiah, Mermel, Craig H., Sougnez, Carrie, Gabriel, Stacey B., Hernandez, Bryan, Shen, Hui, Laird, Peter W., Getz, Gad, Meyerson, Matthew, Beroukhim, Rameen
Опубликовано 2013

Cancer vulnerabilities unveiled by genomic loss

по Nijhawan, Deepak, Zack, Travis I., Ren, Yin, Strickland, Matthew R., Lamothe, Rebecca, Schumacher, Steven E., Tsherniak, Aviad, Besche, Henrike C., Rosenbluh, Joseph, Shehata, Shyemaa, Cowley, Glenn S., Weir, Barbara A., Goldberg, Alfred L., Mesirov, Jill P., Root, David E., Bhatia, Sangeeta N., Beroukhim, Rameen, Hahn, William C.
Опубликовано 2012

Landscape of genomic alterations in pituitary adenomas

по Bi, Wenya Linda, Horowitz, Peleg, Greenwald, Noah F., Abedalthagafi, Malak, Agarwalla, Pankaj K., Gibson, Will J., Mei, Yu, Schumacher, Steven, Ben-David, Uri, Chevalier, Aaron, Carter, Scott, Tiao, Grace, Brastianos, Priscilla, Ligon, Azra H., Ducar, Matthew, MacConaill, Laura, Laws, Edward R., Santagata, Sandro, Beroukhim, Rameen, Dunn, Ian F.
Опубликовано в: Clin Cancer Res (2016)

Widespread genetic heterogeneity in multiple myeloma: implications for targeted therapy

по Lohr, Jens G., Stojanov, Petar, Carter, Scott L., Cruz-Gordillo, Peter, Lawrence, Michael S., Auclair, Daniel, Sougnez, Carrie, Knoechel, Birgit, Gould, Joshua, Saksena, Gordon, Cibulskis, Kristian, McKenna, Aaron, Chapman, Michael A., Straussman, Ravid, Levy, Joan, Perkins, Louise M., Keats, Jonathan J., Schumacher, Steven E., Rosenberg, Mara, Getz, Gad, Golub, Todd R.
Опубликовано в: Cancer Cell (2014)

Genomic evolution and chemoresistance in germ-cell tumours

по Taylor-Weiner, Amaro, Zack, Travis, O’Donnell, Elizabeth, Guerriero, Jennifer L., Bernard, Brandon, Reddy, Anita, Han, G. Celine, AlDubayan, Saud, Amin-Mansour, Ali, Schumacher, Steven E., Litchfield, Kevin, Turnbull, Clare, Gabriel, Stacey, Beroukhim, Rameen, Getz, Gad, Carter, Scott L., Hirsch, Michelle S., Letai, Anthony, Sweeney, Christopher, Van Allen, Eliezer M.
Опубликовано в: Nature (2016)