CanPredict: a computational tool for predicting cancer-associated missense mutations

מאת Kaminker, Joshua S., Zhang, Yan, Watanabe, Colin, Zhang, Zemin
יצא לאור 2007

MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities

מאת Reeder, Janina, Huang, Mo, Kaminker, Joshua S, Paulson, Joseph N
הוצא לאור ב Bioinformatics (2020)

Regulation of Neuronal Gene Expression and Survival by Basal NMDA Receptor Activity: A Role for Histone Deacetylase 4

מאת Chen, Yelin, Wang, Yuanyuan, Modrusan, Zora, Sheng, Morgan, Kaminker, Joshua S.
הוצא לאור ב J Neurosci (2014)

High-resolution analysis of copy number alterations and associated expression changes in ovarian tumors

מאת Haverty, Peter M, Hon, Lawrence S, Kaminker, Joshua S, Chant, John, Zhang, Zemin
יצא לאור 2009

ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses

מאת Huntley, Melanie A., Larson, Jessica L., Chaivorapol, Christina, Becker, Gabriel, Lawrence, Michael, Hackney, Jason A., Kaminker, Joshua S.
הוצא לאור ב Bioinformatics (2013)

Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes

מאת Yandell, Mark, Mungall, Chris J, Smith, Chris, Prochnik, Simon, Kaminker, Joshua, Hartzell, George, Lewis, Suzanna, Rubin, Gerald M
יצא לאור 2006

Complex regulation of ADAR-mediated RNA-editing across tissues

מאת Huntley, Melanie A., Lou, Melanie, Goldstein, Leonard D., Lawrence, Michael, Dijkgraaf, Gerrit J.P., Kaminker, Joshua S., Gentleman, Robert
הוצא לאור ב BMC Genomics (2016)

Progranulin deficiency causes impairment of autophagy and TDP-43 accumulation

מאת Chang, Michael C., Srinivasan, Karpagam, Friedman, Brad A., Suto, Eric, Modrusan, Zora, Lee, Wyne P., Kaminker, Joshua S., Hansen, David V., Sheng, Morgan
הוצא לאור ב J Exp Med (2017)

Single-molecule nanopore sequencing reveals extreme target copy number heterogeneity in arylomycin-resistant mutants

מאת Girgis, Hany S., DuPai, Cory D., Lund, Jessica, Reeder, Janina, Guillory, Joseph, Durinck, Steffen, Liang, Yuxin, Kaminker, Joshua, Smith, Peter A., Skippington, Elizabeth
הוצא לאור ב Proc Natl Acad Sci U S A (2021)

DLK initiates a transcriptional program that couples apoptotic and regenerative responses to axonal injury

מאת Watkins, Trent A., Wang, Bei, Huntwork-Rodriguez, Sarah, Yang, Jing, Jiang, Zhiyu, Eastham-Anderson, Jeffrey, Modrusan, Zora, Kaminker, Joshua S., Tessier-Lavigne, Marc, Lewcock, Joseph W.
יצא לאור 2013

Identification and functional analysis of endothelial tip cell–enriched genes

מאת del Toro, Raquel, Prahst, Claudia, Mathivet, Thomas, Siegfried, Geraldine, Kaminker, Joshua S., Larrivee, Bruno, Breant, Christiane, Duarte, Antonio, Takakura, Nobuyuki, Fukamizu, Akiyoshi, Penninger, Josef, Eichmann, Anne
הוצא לאור ב Blood (2010)

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

מאת Kaminker, Joshua S, Bergman, Casey M, Kronmiller, Brent, Carlson, Joseph, Svirskas, Robert, Patel, Sandeep, Frise, Erwin, Wheeler, David A, Lewis, Suzanna E, Rubin, Gerald M, Ashburner, Michael, Celniker, Susan E
יצא לאור 2002

Spatially Coordinated Kinase Signaling Regulates Local Axon Degeneration

מאת Chen, Mark, Maloney, Janice A., Kallop, Dara Y., Atwal, Jasvinder K., Tam, Stephen J., Baer, Kristin, Kissel, Holger, Kaminker, Joshua S., Lewcock, Joseph W., Weimer, Robby M., Watts, Ryan J.
הוצא לאור ב J Neurosci (2012)

Dual leucine zipper kinase-dependent PERK activation contributes to neuronal degeneration following insult

מאת Larhammar, Martin, Huntwork-Rodriguez, Sarah, Jiang, Zhiyu, Solanoy, Hilda, Sengupta Ghosh, Arundhati, Wang, Bei, Kaminker, Joshua S, Huang, Kevin, Eastham-Anderson, Jeffrey, Siu, Michael, Modrusan, Zora, Farley, Madeline M, Tessier-Lavigne, Marc, Lewcock, Joseph W, Watkins, Trent A
הוצא לאור ב eLife (2017)

Untangling the brain's neuroinflammatory and neurodegenerative transcriptional responses

מאת Srinivasan, Karpagam, Friedman, Brad A., Larson, Jessica L., Lauffer, Benjamin E., Goldstein, Leonard D., Appling, Laurie L., Borneo, Jovencio, Poon, Chungkee, Ho, Terence, Cai, Fang, Steiner, Pascal, van der Brug, Marcel P., Modrusan, Zora, Kaminker, Joshua S., Hansen, David V.
הוצא לאור ב Nat Commun (2016)

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

מאת Hoskins, Roger A, Smith, Christopher D, Carlson, Joseph W, Carvalho, A Bernardo, Halpern, Aaron, Kaminker, Joshua S, Kennedy, Cameron, Mungall, Chris J, Sullivan, Beth A, Sutton, Granger G, Yasuhara, Jiro C, Wakimoto, Barbara T, Myers, Eugene W, Celniker, Susan E, Rubin, Gerald M, Karpen, Gary H
יצא לאור 2002

Histone Deacetylase (HDAC) Inhibitor Kinetic Rate Constants Correlate with Cellular Histone Acetylation but Not Transcription and Cell Viability

מאת Lauffer, Benjamin E. L., Mintzer, Robert, Fong, Rina, Mukund, Susmith, Tam, Christine, Zilberleyb, Inna, Flicke, Birgit, Ritscher, Allegra, Fedorowicz, Grazyna, Vallero, Roxanne, Ortwine, Daniel F., Gunzner, Janet, Modrusan, Zora, Neumann, Lars, Koth, Christopher M., Lupardus, Patrick J., Kaminker, Joshua S., Heise, Christopher E., Steiner, Pascal
יצא לאור 2013

Granulocyte-colony stimulating factor promotes lung metastasis through mobilization of Ly6G+Ly6C+ granulocytes

מאת Kowanetz, Marcin, Wu, Xiumin, Lee, John, Tan, Martha, Hagenbeek, Thijs, Qu, Xueping, Yu, Lanlan, Ross, Jed, Korsisaari, Nina, Cao, Tim, Bou-Reslan, Hani, Kallop, Dara, Weimer, Robby, Ludlam, Mary J. C., Kaminker, Joshua S., Modrusan, Zora, van Bruggen, Nicholas, Peale, Franklin V., Carano, Richard, Meng, Y. Gloria, Ferrara, Napoleone
יצא לאור 2010

A common variant of IL-6R is associated with elevated IL-6 pathway activity in Alzheimer’s disease brains

מאת Haddick, Patrick C.G., Larson, Jessica L., Rathore, Nisha, Bhangale, Tushar R., Phung, Qui T., Srinivasan, Karpagam, Hansen, David V., Lill, Jennie R., Pericak-Vance, Margaret A., Haines, Jonathan, Farrer, Lindsay A., Kauwe, John S., Schellenberg, Gerard D., Cruchaga, Carlos, Goate, Alison M., Behrens, Timothy W., Watts, Ryan J., Graham, Robert R., Kaminker, Joshua S., van der Brug, Marcel
הוצא לאור ב J Alzheimers Dis (2017)

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review

מאת Misra, Sima, Crosby, Madeline A, Mungall, Christopher J, Matthews, Beverley B, Campbell, Kathryn S, Hradecky, Pavel, Huang, Yanmei, Kaminker, Joshua S, Millburn, Gillian H, Prochnik, Simon E, Smith, Christopher D, Tupy, Jonathan L, Whitfield, Eleanor J, Bayraktaroglu, Leyla, Berman, Benjamin P, Bettencourt, Brian R, Celniker, Susan E, de Grey, Aubrey DNJ, Drysdale, Rachel A, Harris, Nomi L, Richter, John, Russo, Susan, Schroeder, Andrew J, Shu, ShengQiang, Stapleton, Mark, Yamada, Chihiro, Ashburner, Michael, Gelbart, William M, Rubin, Gerald M, Lewis, Suzanna E
יצא לאור 2002