Integrating atom-based and residue-based scoring functions for protein–protein docking

بواسطة Vreven, Thom, Hwang, Howook, Weng, Zhiping
منشور في 2011

Exploring Angular Distance in Protein-Protein Docking Algorithms

بواسطة Vreven, Thom, Hwang, Howook, Weng, Zhiping
منشور في 2013

Binding Interface Prediction by Combining Protein-protein Docking Results

بواسطة Hwang, Howook, Vreven, Thom, Weng, Zhiping
منشور في 2013

A hybrid method for protein–protein interface prediction

بواسطة Hwang, Howook, Petrey, Donald, Honig, Barry
الحاوية / القاعدة Protein Sci (2015)

Protein-Protein Docking Benchmark Version 4.0

بواسطة Hwang, Howook, Vreven, Thom, Janin, Joël, Weng, Zhiping
منشور في 2010

Structure-based prediction of ligand–protein interactions on a genome-wide scale

بواسطة Hwang, Howook, Dey, Fabian, Petrey, Donald, Honig, Barry
الحاوية / القاعدة Proc Natl Acad Sci U S A (2017)

Prediction of protein–protein binding free energies

بواسطة Vreven, Thom, Hwang, Howook, Pierce, Brian G, Weng, Zhiping
منشور في 2012

Evaluating template-based and template-free protein–protein complex structure prediction

بواسطة Vreven, Thom, Hwang, Howook, Pierce, Brian G., Weng, Zhiping
منشور في 2014

Performance of ZDOCK in CAPRI rounds 20–26

بواسطة Vreven, Thom, Pierce, Brian G., Hwang, Howook, Weng, Zhiping
منشور في 2013

Protein-Protein Docking Benchmark Version 3.0

بواسطة Hwang, Howook, Pierce, Brian, Mintseris, Julian, Janin, Joël, Weng, Zhiping
منشور في 2008

A Machine Learning Approach for the Prediction of Protein Surface Loop Flexibility

بواسطة Hwang, Howook, Vreven, Thom, Whitfield, Troy W., Wiehe, Kevin, Weng, Zhiping
منشور في 2011

Performance of ZDOCK and ZRANK in CAPRI Rounds 13 - 19

بواسطة Hwang, Howook, Vreven, Thom, Pierce, Brian, Hung, Jui-Hung, Weng, Zhiping
منشور في 2010

ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers

بواسطة Pierce, Brian G., Wiehe, Kevin, Hwang, Howook, Kim, Bong-Hyun, Vreven, Thom, Weng, Zhiping
منشور في 2014

Template-based Prediction of Protein Function

بواسطة Petrey, Donald, Chen, T. Scott, Deng, Lei, Garzon, Jose Ignacio, Hwang, Howook, Lasso, Gorka, Lee, Hunjoong, Silkov, Antonina, Honig, Barry
الحاوية / القاعدة Curr Opin Struct Biol (2015)

A structure-based benchmark for protein–protein binding affinity

بواسطة Kastritis, Panagiotis L, Moal, Iain H, Hwang, Howook, Weng, Zhiping, Bates, Paul A, Bonvin, Alexandre M J J, Janin, Joël
منشور في 2011

Blind Prediction of Interfacial Water Positions in CAPRI

بواسطة Lensink, Marc F., Moal, Iain H., Bates, Paul A., Kastritis, Panagiotis L., Melquiond, Adrien S.J., Karaca, Ezgi, Schmitz, Christophe, van Dijk, Marc, Bonvin, Alexandre M.J.J., Eisenstein, Miriam, Jiménez-García, Brian, Grosdidier, Solène, Solernou, Albert, Pérez-Cano, Laura, Pallara, Chiara, Fernández-Recio, Juan, Xu, Jianqing, Muthu, Pravin, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Grudinin, Sergei, Derevyanko, Georgy, Mitchell, Julie C., Wieting, John, Kanamori, Eiji, Tsuchiya, Yuko, Murakami, Yoichi, Sarmiento, Joy, Standley, Daron M., Shirota, Matsuyuki, Kinoshita, Kengo, Nakamura, Haruki, Chavent, Matthieu, Ritchie, David W., Park, Hahnbeom, Ko, Junsu, Lee, Hasup, Seok, Chaok, Shen, Yang, Kozakov, Dima, Vajda, Sandor, Kundrotas, Petras J., Vakser, Ilya A., Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Buch, Idit, Farkash, Efrat, Wolfson, Haim J., Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Shen-You, Zou, Xiaoqin, Wojdyla, Justyna A., Kleanthous, Colin, Wodak, Shoshana J.
الحاوية / القاعدة Proteins (2013)

Community-wide Evaluation of Methods for Predicting the Effect of Mutations on Protein-Protein Interactions

بواسطة Moretti, Rocco, Fleishman, Sarel J., Agius, Rudi, Torchala, Mieczyslaw, Bates, Paul A., Kastritis, Panagiotis L., Rodrigues, João P. G. L. M., Trellet, Mikaël, Bonvin, Alexandre M. J. J., Cui, Meng, Rooman, Marianne, Gillis, Dimitri, Dehouck, Yves, Moal, Iain, Romero-Durana, Miguel, Perez-Cano, Laura, Pallara, Chiara, Jimenez, Brian, Fernandez-Recio, Juan, Flores, Samuel, Pacella, Michael, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Popov, Petr, Grudinin, Sergei, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Zhao, Nan, Korkin, Dmitry, Zhu, Xiaolei, Demerdash, Omar N. A., Mitchell, Julie C., Kanamori, Eiji, Tsuchiya, Yuko, Nakamura, Haruki, Lee, Hasup, Park, Hahnbeom, Seok, Chaok, Sarmiento, Jamica, Liang, Shide, Teraguchi, Shusuke, Standley, Daron M., Shimoyama, Hiromitsu, Terashi, Genki, Takeda-Shitaka, Mayuko, Iwadate, Mitsuo, Umeyama, Hideaki, Beglov, Dmitri, Hall, David R., Kozakov, Dima, Vajda, Sandor, Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Huang, Yangyu, Li, Haotian, Yang, Xiufeng, Ji, Xiaofeng, Liu, Shiyong, Xiao, Yi, Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Sheng-You, Zou, Xiaoqin, Velankar, Sameer, Janin, Joël, Wodak, Shoshana J., Baker, David
منشور في 2013

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

بواسطة Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C., Demerdash, Omar N.A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H., Li, Xiaofan, Bates, Paul A., Zacharias, Martin, Park, Hahnbeom, Ko, Jun-su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Şefik Kerem, Ozbek, Pemra, Ben Tal, Nir, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G., Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H., Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M., Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M., Hall, Robert G., Morgan, Jessica L., Hsu, Victor L., Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Zhang, Weiyi, Camacho, Carlos J., Kilambi, Krishna P., Sircar, Aroop, Gray, Jeffrey J., Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
منشور في 2011