Integrating atom-based and residue-based scoring functions for protein–protein docking

Yazar: Vreven, Thom, Hwang, Howook, Weng, Zhiping
Baskı/Yayın Bilgisi 2011

Exploring Angular Distance in Protein-Protein Docking Algorithms

Yazar: Vreven, Thom, Hwang, Howook, Weng, Zhiping
Baskı/Yayın Bilgisi 2013

Binding Interface Prediction by Combining Protein-protein Docking Results

Yazar: Hwang, Howook, Vreven, Thom, Weng, Zhiping
Baskı/Yayın Bilgisi 2013

A hybrid method for protein–protein interface prediction

Yazar: Hwang, Howook, Petrey, Donald, Honig, Barry
Yayımlandı Protein Sci (2015)

Protein-Protein Docking Benchmark Version 4.0

Yazar: Hwang, Howook, Vreven, Thom, Janin, Joël, Weng, Zhiping
Baskı/Yayın Bilgisi 2010

Structure-based prediction of ligand–protein interactions on a genome-wide scale

Yazar: Hwang, Howook, Dey, Fabian, Petrey, Donald, Honig, Barry
Yayımlandı Proc Natl Acad Sci U S A (2017)

Prediction of protein–protein binding free energies

Yazar: Vreven, Thom, Hwang, Howook, Pierce, Brian G, Weng, Zhiping
Baskı/Yayın Bilgisi 2012

Evaluating template-based and template-free protein–protein complex structure prediction

Yazar: Vreven, Thom, Hwang, Howook, Pierce, Brian G., Weng, Zhiping
Baskı/Yayın Bilgisi 2014

Performance of ZDOCK in CAPRI rounds 20–26

Yazar: Vreven, Thom, Pierce, Brian G., Hwang, Howook, Weng, Zhiping
Baskı/Yayın Bilgisi 2013

Protein-Protein Docking Benchmark Version 3.0

Yazar: Hwang, Howook, Pierce, Brian, Mintseris, Julian, Janin, Joël, Weng, Zhiping
Baskı/Yayın Bilgisi 2008

A Machine Learning Approach for the Prediction of Protein Surface Loop Flexibility

Yazar: Hwang, Howook, Vreven, Thom, Whitfield, Troy W., Wiehe, Kevin, Weng, Zhiping
Baskı/Yayın Bilgisi 2011

Performance of ZDOCK and ZRANK in CAPRI Rounds 13 - 19

Yazar: Hwang, Howook, Vreven, Thom, Pierce, Brian, Hung, Jui-Hung, Weng, Zhiping
Baskı/Yayın Bilgisi 2010

ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers

Yazar: Pierce, Brian G., Wiehe, Kevin, Hwang, Howook, Kim, Bong-Hyun, Vreven, Thom, Weng, Zhiping
Baskı/Yayın Bilgisi 2014

Template-based Prediction of Protein Function

Yazar: Petrey, Donald, Chen, T. Scott, Deng, Lei, Garzon, Jose Ignacio, Hwang, Howook, Lasso, Gorka, Lee, Hunjoong, Silkov, Antonina, Honig, Barry
Yayımlandı Curr Opin Struct Biol (2015)

A structure-based benchmark for protein–protein binding affinity

Yazar: Kastritis, Panagiotis L, Moal, Iain H, Hwang, Howook, Weng, Zhiping, Bates, Paul A, Bonvin, Alexandre M J J, Janin, Joël
Baskı/Yayın Bilgisi 2011

Blind Prediction of Interfacial Water Positions in CAPRI

Yazar: Lensink, Marc F., Moal, Iain H., Bates, Paul A., Kastritis, Panagiotis L., Melquiond, Adrien S.J., Karaca, Ezgi, Schmitz, Christophe, van Dijk, Marc, Bonvin, Alexandre M.J.J., Eisenstein, Miriam, Jiménez-García, Brian, Grosdidier, Solène, Solernou, Albert, Pérez-Cano, Laura, Pallara, Chiara, Fernández-Recio, Juan, Xu, Jianqing, Muthu, Pravin, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Grudinin, Sergei, Derevyanko, Georgy, Mitchell, Julie C., Wieting, John, Kanamori, Eiji, Tsuchiya, Yuko, Murakami, Yoichi, Sarmiento, Joy, Standley, Daron M., Shirota, Matsuyuki, Kinoshita, Kengo, Nakamura, Haruki, Chavent, Matthieu, Ritchie, David W., Park, Hahnbeom, Ko, Junsu, Lee, Hasup, Seok, Chaok, Shen, Yang, Kozakov, Dima, Vajda, Sandor, Kundrotas, Petras J., Vakser, Ilya A., Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Buch, Idit, Farkash, Efrat, Wolfson, Haim J., Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Shen-You, Zou, Xiaoqin, Wojdyla, Justyna A., Kleanthous, Colin, Wodak, Shoshana J.
Yayımlandı Proteins (2013)

Community-wide Evaluation of Methods for Predicting the Effect of Mutations on Protein-Protein Interactions

Yazar: Moretti, Rocco, Fleishman, Sarel J., Agius, Rudi, Torchala, Mieczyslaw, Bates, Paul A., Kastritis, Panagiotis L., Rodrigues, João P. G. L. M., Trellet, Mikaël, Bonvin, Alexandre M. J. J., Cui, Meng, Rooman, Marianne, Gillis, Dimitri, Dehouck, Yves, Moal, Iain, Romero-Durana, Miguel, Perez-Cano, Laura, Pallara, Chiara, Jimenez, Brian, Fernandez-Recio, Juan, Flores, Samuel, Pacella, Michael, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Popov, Petr, Grudinin, Sergei, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Zhao, Nan, Korkin, Dmitry, Zhu, Xiaolei, Demerdash, Omar N. A., Mitchell, Julie C., Kanamori, Eiji, Tsuchiya, Yuko, Nakamura, Haruki, Lee, Hasup, Park, Hahnbeom, Seok, Chaok, Sarmiento, Jamica, Liang, Shide, Teraguchi, Shusuke, Standley, Daron M., Shimoyama, Hiromitsu, Terashi, Genki, Takeda-Shitaka, Mayuko, Iwadate, Mitsuo, Umeyama, Hideaki, Beglov, Dmitri, Hall, David R., Kozakov, Dima, Vajda, Sandor, Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Huang, Yangyu, Li, Haotian, Yang, Xiufeng, Ji, Xiaofeng, Liu, Shiyong, Xiao, Yi, Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Sheng-You, Zou, Xiaoqin, Velankar, Sameer, Janin, Joël, Wodak, Shoshana J., Baker, David
Baskı/Yayın Bilgisi 2013

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

Yazar: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C., Demerdash, Omar N.A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H., Li, Xiaofan, Bates, Paul A., Zacharias, Martin, Park, Hahnbeom, Ko, Jun-su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Şefik Kerem, Ozbek, Pemra, Ben Tal, Nir, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G., Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H., Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M., Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M., Hall, Robert G., Morgan, Jessica L., Hsu, Victor L., Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Zhang, Weiyi, Camacho, Carlos J., Kilambi, Krishna P., Sircar, Aroop, Gray, Jeffrey J., Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
Baskı/Yayın Bilgisi 2011